Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
CXCL12P48061 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CXCL12P48061 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CXCL12P48061 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC17.03■□□□□ 0.32
CXCL12P48061 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CXCL12P48061 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CXCL12P48061 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CXCL12P48061 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CXCL12P48061 TDG-209ENST00000544861 1387 ntTSL 2 BASIC17.02■□□□□ 0.32
CXCL12P48061 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CXCL12P48061 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC17.02■□□□□ 0.32
CXCL12P48061 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC17.02■□□□□ 0.32
CXCL12P48061 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CXCL12P48061 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CXCL12P48061 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CXCL12P48061 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.02■□□□□ 0.32
CXCL12P48061 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CXCL12P48061 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CXCL12P48061 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CXCL12P48061 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC17.02■□□□□ 0.32
CXCL12P48061 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CXCL12P48061 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC17.02■□□□□ 0.32
CXCL12P48061 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC17.02■□□□□ 0.32
CXCL12P48061 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CXCL12P48061 RN7SL692P-201ENST00000464677 288 ntBASIC17.02■□□□□ 0.32
CXCL12P48061 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CXCL12P48061 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC17.02■□□□□ 0.32
CXCL12P48061 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC17.02■□□□□ 0.32
CXCL12P48061 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC17.02■□□□□ 0.32
CXCL12P48061 AC004233.3-201ENST00000607794 1269 ntBASIC17.02■□□□□ 0.32
CXCL12P48061 AC073592.8-201ENST00000624126 511 ntBASIC17.02■□□□□ 0.32
CXCL12P48061 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CXCL12P48061 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
CXCL12P48061 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.02■□□□□ 0.31
CXCL12P48061 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.02■□□□□ 0.31
CXCL12P48061 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
CXCL12P48061 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CXCL12P48061 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CXCL12P48061 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CXCL12P48061 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CXCL12P48061 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.01■□□□□ 0.31
CXCL12P48061 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC17.01■□□□□ 0.31
CXCL12P48061 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CXCL12P48061 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CXCL12P48061 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CXCL12P48061 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.01■□□□□ 0.31
CXCL12P48061 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CXCL12P48061 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CXCL12P48061 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC17.01■□□□□ 0.31
CXCL12P48061 CD81-202ENST00000381036 880 ntTSL 3 BASIC17.01■□□□□ 0.31
CXCL12P48061 HCG4-201ENST00000418983 998 ntBASIC17.01■□□□□ 0.31
CXCL12P48061 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC17.01■□□□□ 0.31
CXCL12P48061 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
CXCL12P48061 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC17.01■□□□□ 0.31
CXCL12P48061 NOP2-220ENST00000545915 630 ntTSL 2 BASIC17.01■□□□□ 0.31
CXCL12P48061 COQ9-214ENST00000567933 882 ntTSL 3 BASIC17.01■□□□□ 0.31
CXCL12P48061 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC17.01■□□□□ 0.31
CXCL12P48061 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CXCL12P48061 MIR6752-201ENST00000618442 71 ntBASIC17.01■□□□□ 0.31
CXCL12P48061 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
CXCL12P48061 AL590560.3-201ENST00000623350 461 ntBASIC17.01■□□□□ 0.31
CXCL12P48061 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CXCL12P48061 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.01■□□□□ 0.31
CXCL12P48061 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
CXCL12P48061 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CXCL12P48061 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
CXCL12P48061 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.01■□□□□ 0.31
CXCL12P48061 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
CXCL12P48061 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
CXCL12P48061 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CXCL12P48061 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17■□□□□ 0.31
CXCL12P48061 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CXCL12P48061 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC17■□□□□ 0.31
CXCL12P48061 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CXCL12P48061 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CXCL12P48061 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
CXCL12P48061 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CXCL12P48061 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CXCL12P48061 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
CXCL12P48061 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17■□□□□ 0.31
CXCL12P48061 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CXCL12P48061 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
CXCL12P48061 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC17■□□□□ 0.31
CXCL12P48061 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC17■□□□□ 0.31
CXCL12P48061 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC17■□□□□ 0.31
CXCL12P48061 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CXCL12P48061 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
CXCL12P48061 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC17■□□□□ 0.31
CXCL12P48061 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CXCL12P48061 MRPS18AP1-201ENST00000414458 589 ntBASIC17■□□□□ 0.31
CXCL12P48061 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC17■□□□□ 0.31
CXCL12P48061 MTRF1LP2-201ENST00000506027 1122 ntBASIC17■□□□□ 0.31
CXCL12P48061 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC17■□□□□ 0.31
CXCL12P48061 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC17■□□□□ 0.31
CXCL12P48061 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
CXCL12P48061 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
CXCL12P48061 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17■□□□□ 0.31
CXCL12P48061 AC100757.3-201ENST00000622361 1406 ntBASIC17■□□□□ 0.31
CXCL12P48061 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17■□□□□ 0.31
CXCL12P48061 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms