Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
SOX3P41225 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
SOX3P41225 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SOX3P41225 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.27■□□□□ 0.2
SOX3P41225 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
SOX3P41225 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.27■□□□□ 0.2
SOX3P41225 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SOX3P41225 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC16.27■□□□□ 0.2
SOX3P41225 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.27■□□□□ 0.2
SOX3P41225 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC16.27■□□□□ 0.2
SOX3P41225 DDX43P3-201ENST00000441064 443 ntBASIC16.27■□□□□ 0.2
SOX3P41225 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC16.27■□□□□ 0.2
SOX3P41225 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC16.27■□□□□ 0.2
SOX3P41225 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC16.27■□□□□ 0.2
SOX3P41225 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.27■□□□□ 0.2
SOX3P41225 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
SOX3P41225 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.27■□□□□ 0.19
SOX3P41225 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
SOX3P41225 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.27■□□□□ 0.19
SOX3P41225 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
SOX3P41225 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.27■□□□□ 0.19
SOX3P41225 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
SOX3P41225 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.27■□□□□ 0.19
SOX3P41225 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SOX3P41225 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX3P41225 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX3P41225 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.26■□□□□ 0.19
SOX3P41225 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX3P41225 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX3P41225 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.26■□□□□ 0.19
SOX3P41225 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX3P41225 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16.26■□□□□ 0.19
SOX3P41225 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC16.26■□□□□ 0.19
SOX3P41225 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.26■□□□□ 0.19
SOX3P41225 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
SOX3P41225 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
SOX3P41225 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX3P41225 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX3P41225 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX3P41225 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX3P41225 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC16.26■□□□□ 0.19
SOX3P41225 AL355312.1-201ENST00000407115 2176 ntBASIC16.26■□□□□ 0.19
SOX3P41225 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX3P41225 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX3P41225 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.26■□□□□ 0.19
SOX3P41225 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
SOX3P41225 MRPL3P1-201ENST00000400109 1033 ntBASIC16.26■□□□□ 0.19
SOX3P41225 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC16.26■□□□□ 0.19
SOX3P41225 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.26■□□□□ 0.19
SOX3P41225 FAM197Y8-203ENST00000450145 560 ntBASIC16.26■□□□□ 0.19
SOX3P41225 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC16.26■□□□□ 0.19
SOX3P41225 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.26■□□□□ 0.19
SOX3P41225 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.26■□□□□ 0.19
SOX3P41225 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
SOX3P41225 TMED1-207ENST00000591695 809 ntTSL 5 BASIC16.26■□□□□ 0.19
SOX3P41225 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SOX3P41225 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
SOX3P41225 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SOX3P41225 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX3P41225 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
SOX3P41225 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX3P41225 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC16.26■□□□□ 0.19
SOX3P41225 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
SOX3P41225 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX3P41225 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SOX3P41225 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
SOX3P41225 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC16.25■□□□□ 0.19
SOX3P41225 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX3P41225 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX3P41225 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX3P41225 BX276092.7-203ENST00000637198 1536 ntBASIC16.25■□□□□ 0.19
SOX3P41225 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX3P41225 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX3P41225 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
SOX3P41225 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SOX3P41225 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SOX3P41225 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.25■□□□□ 0.19
SOX3P41225 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC16.25■□□□□ 0.19
SOX3P41225 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.25■□□□□ 0.19
SOX3P41225 AC103564.2-201ENST00000432853 1299 ntBASIC16.25■□□□□ 0.19
SOX3P41225 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
SOX3P41225 MOK-208ENST00000519058 917 ntTSL 2 BASIC16.25■□□□□ 0.19
SOX3P41225 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SOX3P41225 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.25■□□□□ 0.19
SOX3P41225 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.25■□□□□ 0.19
SOX3P41225 SLC25A6P4-201ENST00000586535 553 ntBASIC16.25■□□□□ 0.19
SOX3P41225 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SOX3P41225 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC16.25■□□□□ 0.19
SOX3P41225 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX3P41225 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
SOX3P41225 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC16.25■□□□□ 0.19
SOX3P41225 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.25■□□□□ 0.19
SOX3P41225 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SOX3P41225 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC16.25■□□□□ 0.19
SOX3P41225 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
SOX3P41225 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX3P41225 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX3P41225 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
SOX3P41225 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SOX3P41225 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms