Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
SMARCA1P28370 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
SMARCA1P28370 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
SMARCA1P28370 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SMARCA1P28370 TOP3BP1-201ENST00000420768 1380 ntBASIC19.7■□□□□ 0.74
SMARCA1P28370 AL021920.2-201ENST00000624828 1351 ntBASIC19.7■□□□□ 0.74
SMARCA1P28370 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SMARCA1P28370 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC19.69■□□□□ 0.74
SMARCA1P28370 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
SMARCA1P28370 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMARCA1P28370 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC19.69■□□□□ 0.74
SMARCA1P28370 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC19.69■□□□□ 0.74
SMARCA1P28370 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC19.69■□□□□ 0.74
SMARCA1P28370 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMARCA1P28370 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC19.69■□□□□ 0.74
SMARCA1P28370 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMARCA1P28370 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC19.69■□□□□ 0.74
SMARCA1P28370 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SMARCA1P28370 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMARCA1P28370 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SMARCA1P28370 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SMARCA1P28370 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC19.69■□□□□ 0.74
SMARCA1P28370 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
SMARCA1P28370 IMP4-203ENST00000409935 958 ntTSL 5 BASIC19.69■□□□□ 0.74
SMARCA1P28370 MED15P5-201ENST00000423150 992 ntBASIC19.69■□□□□ 0.74
SMARCA1P28370 KRT18P2-201ENST00000447938 1258 ntBASIC19.69■□□□□ 0.74
SMARCA1P28370 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC19.69■□□□□ 0.74
SMARCA1P28370 PGAM5P1-201ENST00000518923 814 ntBASIC19.69■□□□□ 0.74
SMARCA1P28370 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC19.69■□□□□ 0.74
SMARCA1P28370 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC19.69■□□□□ 0.74
SMARCA1P28370 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
SMARCA1P28370 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMARCA1P28370 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMARCA1P28370 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMARCA1P28370 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SMARCA1P28370 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SMARCA1P28370 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
SMARCA1P28370 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC19.69■□□□□ 0.74
SMARCA1P28370 AC005332.8-201ENST00000622750 2735 ntBASIC19.69■□□□□ 0.74
SMARCA1P28370 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SMARCA1P28370 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC19.69■□□□□ 0.74
SMARCA1P28370 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMARCA1P28370 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SMARCA1P28370 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SMARCA1P28370 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMARCA1P28370 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMARCA1P28370 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMARCA1P28370 AC092053.1-201ENST00000605787 1936 ntBASIC19.68■□□□□ 0.74
SMARCA1P28370 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC19.68■□□□□ 0.74
SMARCA1P28370 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
SMARCA1P28370 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SMARCA1P28370 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMARCA1P28370 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMARCA1P28370 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMARCA1P28370 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMARCA1P28370 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMARCA1P28370 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC19.68■□□□□ 0.74
SMARCA1P28370 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SMARCA1P28370 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMARCA1P28370 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
SMARCA1P28370 BEX3-201ENST00000361298 921 ntTSL 2 BASIC19.68■□□□□ 0.74
SMARCA1P28370 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMARCA1P28370 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC19.68■□□□□ 0.74
SMARCA1P28370 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SMARCA1P28370 HS6ST1P1-201ENST00000481504 1234 ntBASIC19.68■□□□□ 0.74
SMARCA1P28370 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
SMARCA1P28370 RNA5SP416-201ENST00000516838 111 ntBASIC19.68■□□□□ 0.74
SMARCA1P28370 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SMARCA1P28370 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC19.68■□□□□ 0.74
SMARCA1P28370 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMARCA1P28370 TUBB8P12-201ENST00000308911 1335 ntBASIC19.68■□□□□ 0.74
SMARCA1P28370 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMARCA1P28370 TUBB7P-202ENST00000428444 1305 ntBASIC19.68■□□□□ 0.74
SMARCA1P28370 TUBB8P7-204ENST00000567960 1332 ntBASIC19.68■□□□□ 0.74
SMARCA1P28370 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SMARCA1P28370 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMARCA1P28370 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMARCA1P28370 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC19.68■□□□□ 0.74
SMARCA1P28370 KRT8P49-201ENST00000604166 1432 ntBASIC19.68■□□□□ 0.74
SMARCA1P28370 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMARCA1P28370 CYP51A1P2-201ENST00000419457 1499 ntBASIC19.67■□□□□ 0.74
SMARCA1P28370 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC19.67■□□□□ 0.74
SMARCA1P28370 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SMARCA1P28370 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SMARCA1P28370 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC19.67■□□□□ 0.74
SMARCA1P28370 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMARCA1P28370 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SMARCA1P28370 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
SMARCA1P28370 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMARCA1P28370 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMARCA1P28370 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMARCA1P28370 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMARCA1P28370 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMARCA1P28370 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMARCA1P28370 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMARCA1P28370 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SMARCA1P28370 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
SMARCA1P28370 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMARCA1P28370 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC19.67■□□□□ 0.74
SMARCA1P28370 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms