Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TNFP01375 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TNFP01375 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TNFP01375 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC16.79■□□□□ 0.28
TNFP01375 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.79■□□□□ 0.28
TNFP01375 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
TNFP01375 NEFHP1-201ENST00000412845 2629 ntBASIC16.79■□□□□ 0.28
TNFP01375 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TNFP01375 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
TNFP01375 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TNFP01375 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC16.79■□□□□ 0.28
TNFP01375 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
TNFP01375 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TNFP01375 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
TNFP01375 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TNFP01375 NEK7-201ENST00000367383 586 ntTSL 2 BASIC16.79■□□□□ 0.28
TNFP01375 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TNFP01375 DNAJB3-202ENST00000449667 1266 ntBASIC16.79■□□□□ 0.28
TNFP01375 CEND1P1-201ENST00000451006 455 ntBASIC16.79■□□□□ 0.28
TNFP01375 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC16.79■□□□□ 0.28
TNFP01375 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC16.79■□□□□ 0.28
TNFP01375 YBX1P5-201ENST00000509441 847 ntBASIC16.79■□□□□ 0.28
TNFP01375 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC16.79■□□□□ 0.28
TNFP01375 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC16.79■□□□□ 0.28
TNFP01375 AL078644.1-201ENST00000609881 752 ntBASIC16.79■□□□□ 0.28
TNFP01375 MED16-214ENST00000617672 554 ntTSL 5 BASIC16.79■□□□□ 0.28
TNFP01375 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.79■□□□□ 0.28
TNFP01375 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TNFP01375 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16.79■□□□□ 0.28
TNFP01375 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC16.79■□□□□ 0.28
TNFP01375 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
TNFP01375 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TNFP01375 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.79■□□□□ 0.28
TNFP01375 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TNFP01375 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TNFP01375 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TNFP01375 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.79■□□□□ 0.28
TNFP01375 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TNFP01375 AC016396.2-201ENST00000562575 1417 ntBASIC16.79■□□□□ 0.28
TNFP01375 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TNFP01375 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TNFP01375 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
TNFP01375 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC16.78■□□□□ 0.28
TNFP01375 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
TNFP01375 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TNFP01375 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TNFP01375 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC16.78■□□□□ 0.28
TNFP01375 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC16.78■□□□□ 0.28
TNFP01375 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.78■□□□□ 0.28
TNFP01375 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
TNFP01375 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.78■□□□□ 0.28
TNFP01375 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC16.78■□□□□ 0.28
TNFP01375 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC16.78■□□□□ 0.28
TNFP01375 URGCP-206ENST00000446958 365 ntTSL 2 BASIC16.78■□□□□ 0.28
TNFP01375 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
TNFP01375 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC16.78■□□□□ 0.28
TNFP01375 CFL1-202ENST00000524553 860 ntTSL 2 BASIC16.78■□□□□ 0.28
TNFP01375 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
TNFP01375 SNHG9-202ENST00000564014 471 ntBASIC16.78■□□□□ 0.28
TNFP01375 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC16.78■□□□□ 0.28
TNFP01375 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TNFP01375 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TNFP01375 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
TNFP01375 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC16.78■□□□□ 0.28
TNFP01375 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TNFP01375 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC16.78■□□□□ 0.28
TNFP01375 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TNFP01375 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TNFP01375 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TNFP01375 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
TNFP01375 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TNFP01375 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TNFP01375 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TNFP01375 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC16.77■□□□□ 0.28
TNFP01375 ELL2P1-201ENST00000413990 1906 ntBASIC16.77■□□□□ 0.28
TNFP01375 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
TNFP01375 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TNFP01375 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC16.77■□□□□ 0.28
TNFP01375 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC16.77■□□□□ 0.28
TNFP01375 AP006288.1-201ENST00000446065 395 ntBASIC16.77■□□□□ 0.28
TNFP01375 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.77■□□□□ 0.28
TNFP01375 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
TNFP01375 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TNFP01375 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC16.77■□□□□ 0.28
TNFP01375 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
TNFP01375 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC16.77■□□□□ 0.28
TNFP01375 AL596442.2-201ENST00000610240 980 ntBASIC16.77■□□□□ 0.28
TNFP01375 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TNFP01375 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TNFP01375 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.77■□□□□ 0.28
TNFP01375 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
TNFP01375 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
TNFP01375 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
TNFP01375 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
TNFP01375 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
TNFP01375 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC16.77■□□□□ 0.27
TNFP01375 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC16.76■□□□□ 0.27
TNFP01375 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TNFP01375 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TNFP01375 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms