Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC17.16■□□□□ 0.34
PDGFBP01127 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC17.16■□□□□ 0.34
PDGFBP01127 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PDGFBP01127 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
PDGFBP01127 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC17.16■□□□□ 0.34
PDGFBP01127 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC17.16■□□□□ 0.34
PDGFBP01127 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC17.16■□□□□ 0.34
PDGFBP01127 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC17.16■□□□□ 0.34
PDGFBP01127 MIR4525-201ENST00000580000 75 ntBASIC17.16■□□□□ 0.34
PDGFBP01127 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC17.16■□□□□ 0.34
PDGFBP01127 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PDGFBP01127 NKG7-205ENST00000600427 520 ntTSL 3 BASIC17.16■□□□□ 0.34
PDGFBP01127 RNA5-8SN1-201ENST00000610460 153 ntBASIC17.16■□□□□ 0.34
PDGFBP01127 RNA5-8SN5-202ENST00000612463 153 ntBASIC17.16■□□□□ 0.34
PDGFBP01127 RNA5-8SN4-201ENST00000613359 153 ntBASIC17.16■□□□□ 0.34
PDGFBP01127 RNA5-8SN5-201ENST00000619471 153 ntBASIC17.16■□□□□ 0.34
PDGFBP01127 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PDGFBP01127 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PDGFBP01127 AL020996.1-203ENST00000536896 2307 ntBASIC17.16■□□□□ 0.34
PDGFBP01127 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
PDGFBP01127 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.16■□□□□ 0.34
PDGFBP01127 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PDGFBP01127 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.16■□□□□ 0.34
PDGFBP01127 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.16■□□□□ 0.34
PDGFBP01127 AC016027.1-202ENST00000607927 1699 ntBASIC17.16■□□□□ 0.34
PDGFBP01127 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC17.16■□□□□ 0.34
PDGFBP01127 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.16■□□□□ 0.34
PDGFBP01127 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PDGFBP01127 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC17.16■□□□□ 0.34
PDGFBP01127 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
PDGFBP01127 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
PDGFBP01127 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PDGFBP01127 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PDGFBP01127 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.15■□□□□ 0.34
PDGFBP01127 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC17.15■□□□□ 0.34
PDGFBP01127 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
PDGFBP01127 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PDGFBP01127 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PDGFBP01127 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PDGFBP01127 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
PDGFBP01127 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PDGFBP01127 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PDGFBP01127 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
PDGFBP01127 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PDGFBP01127 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PDGFBP01127 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC17.15■□□□□ 0.34
PDGFBP01127 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC17.15■□□□□ 0.34
PDGFBP01127 HLA-V-204ENST00000476601 1289 ntBASIC17.15■□□□□ 0.34
PDGFBP01127 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
PDGFBP01127 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC17.15■□□□□ 0.34
PDGFBP01127 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
PDGFBP01127 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PDGFBP01127 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PDGFBP01127 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PDGFBP01127 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PDGFBP01127 NARF-206ENST00000457415 1668 ntTSL 5 BASIC17.15■□□□□ 0.34
PDGFBP01127 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.15■□□□□ 0.34
PDGFBP01127 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PDGFBP01127 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PDGFBP01127 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.15■□□□□ 0.34
PDGFBP01127 AL031598.1-201ENST00000561511 1773 ntBASIC17.15■□□□□ 0.34
PDGFBP01127 AP3S2-216ENST00000617003 1561 ntBASIC17.15■□□□□ 0.34
PDGFBP01127 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.15■□□□□ 0.34
PDGFBP01127 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.34
PDGFBP01127 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.34
PDGFBP01127 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
PDGFBP01127 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PDGFBP01127 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PDGFBP01127 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
PDGFBP01127 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
PDGFBP01127 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PDGFBP01127 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PDGFBP01127 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PDGFBP01127 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC17.14■□□□□ 0.33
PDGFBP01127 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
PDGFBP01127 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
PDGFBP01127 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
PDGFBP01127 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
PDGFBP01127 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC17.14■□□□□ 0.33
PDGFBP01127 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC17.14■□□□□ 0.33
PDGFBP01127 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC17.14■□□□□ 0.33
PDGFBP01127 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC17.14■□□□□ 0.33
PDGFBP01127 PACS1-203ENST00000524815 628 ntTSL 4 BASIC17.14■□□□□ 0.33
PDGFBP01127 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
PDGFBP01127 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC17.14■□□□□ 0.33
PDGFBP01127 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
PDGFBP01127 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC17.14■□□□□ 0.33
PDGFBP01127 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC17.14■□□□□ 0.33
PDGFBP01127 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
PDGFBP01127 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
PDGFBP01127 AL844908.2-201ENST00000609461 460 ntBASIC17.14■□□□□ 0.33
PDGFBP01127 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PDGFBP01127 AC007967.4-201ENST00000614700 386 ntBASIC17.14■□□□□ 0.33
PDGFBP01127 SPTSSB-204ENST00000617024 1292 ntBASIC17.14■□□□□ 0.33
PDGFBP01127 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PDGFBP01127 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.14■□□□□ 0.33
PDGFBP01127 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC17.14■□□□□ 0.33
PDGFBP01127 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC17.14■□□□□ 0.33
PDGFBP01127 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PDGFBP01127 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms