Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
MBD4O95243 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC20.52■□□□□ 0.88
MBD4O95243 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC20.52■□□□□ 0.88
MBD4O95243 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC20.52■□□□□ 0.88
MBD4O95243 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC20.52■□□□□ 0.88
MBD4O95243 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC20.52■□□□□ 0.88
MBD4O95243 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC20.52■□□□□ 0.88
MBD4O95243 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC20.52■□□□□ 0.88
MBD4O95243 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
MBD4O95243 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
MBD4O95243 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
MBD4O95243 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
MBD4O95243 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
MBD4O95243 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.87
MBD4O95243 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
MBD4O95243 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
MBD4O95243 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
MBD4O95243 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
MBD4O95243 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
MBD4O95243 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC20.51■□□□□ 0.87
MBD4O95243 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
MBD4O95243 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
MBD4O95243 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
MBD4O95243 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
MBD4O95243 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
MBD4O95243 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC20.51■□□□□ 0.87
MBD4O95243 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
MBD4O95243 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC20.51■□□□□ 0.87
MBD4O95243 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
MBD4O95243 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC20.51■□□□□ 0.87
MBD4O95243 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
MBD4O95243 AC010507.1-201ENST00000633895 436 ntBASIC20.51■□□□□ 0.87
MBD4O95243 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC20.51■□□□□ 0.87
MBD4O95243 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
MBD4O95243 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
MBD4O95243 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
MBD4O95243 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC20.5■□□□□ 0.87
MBD4O95243 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MBD4O95243 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC20.5■□□□□ 0.87
MBD4O95243 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC20.5■□□□□ 0.87
MBD4O95243 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC20.5■□□□□ 0.87
MBD4O95243 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC20.5■□□□□ 0.87
MBD4O95243 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MBD4O95243 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MBD4O95243 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MBD4O95243 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MBD4O95243 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC20.5■□□□□ 0.87
MBD4O95243 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
MBD4O95243 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
MBD4O95243 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
MBD4O95243 AC023274.1-201ENST00000418278 595 ntBASIC20.5■□□□□ 0.87
MBD4O95243 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC20.5■□□□□ 0.87
MBD4O95243 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC20.5■□□□□ 0.87
MBD4O95243 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
MBD4O95243 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC20.5■□□□□ 0.87
MBD4O95243 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC20.5■□□□□ 0.87
MBD4O95243 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
MBD4O95243 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
MBD4O95243 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
MBD4O95243 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
MBD4O95243 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
MBD4O95243 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
MBD4O95243 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC20.5■□□□□ 0.87
MBD4O95243 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC20.5■□□□□ 0.87
MBD4O95243 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC20.5■□□□□ 0.87
MBD4O95243 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MBD4O95243 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MBD4O95243 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
MBD4O95243 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MBD4O95243 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MBD4O95243 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
MBD4O95243 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
MBD4O95243 AC002310.6-201ENST00000624451 1377 ntBASIC20.49■□□□□ 0.87
MBD4O95243 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MBD4O95243 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC20.49■□□□□ 0.87
MBD4O95243 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
MBD4O95243 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
MBD4O95243 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
MBD4O95243 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MBD4O95243 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC20.49■□□□□ 0.87
MBD4O95243 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MBD4O95243 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC20.49■□□□□ 0.87
MBD4O95243 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC20.49■□□□□ 0.87
MBD4O95243 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC20.49■□□□□ 0.87
MBD4O95243 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC20.49■□□□□ 0.87
MBD4O95243 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC20.49■□□□□ 0.87
MBD4O95243 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC20.49■□□□□ 0.87
MBD4O95243 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC20.49■□□□□ 0.87
MBD4O95243 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC20.49■□□□□ 0.87
MBD4O95243 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
MBD4O95243 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
MBD4O95243 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC20.49■□□□□ 0.87
MBD4O95243 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MBD4O95243 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MBD4O95243 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MBD4O95243 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MBD4O95243 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC20.49■□□□□ 0.87
MBD4O95243 BANP-227ENST00000626016 2144 ntTSL 2 BASIC20.48■□□□□ 0.87
MBD4O95243 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MBD4O95243 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms