Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.28■□□□□ 0.36
SHOX2O60902 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
SHOX2O60902 AMT-206ENST00000458307 1860 ntTSL 2 BASIC17.28■□□□□ 0.36
SHOX2O60902 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
SHOX2O60902 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHOX2O60902 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHOX2O60902 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHOX2O60902 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
SHOX2O60902 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.28■□□□□ 0.36
SHOX2O60902 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
SHOX2O60902 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.28■□□□□ 0.36
SHOX2O60902 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
SHOX2O60902 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHOX2O60902 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC17.28■□□□□ 0.36
SHOX2O60902 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHOX2O60902 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.27■□□□□ 0.36
SHOX2O60902 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHOX2O60902 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
SHOX2O60902 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SHOX2O60902 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
SHOX2O60902 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
SHOX2O60902 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHOX2O60902 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
SHOX2O60902 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHOX2O60902 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHOX2O60902 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SHOX2O60902 ESRRAP1-201ENST00000400596 1257 ntBASIC17.27■□□□□ 0.36
SHOX2O60902 AC011506.1-201ENST00000474329 610 ntBASIC17.27■□□□□ 0.36
SHOX2O60902 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.27■□□□□ 0.36
SHOX2O60902 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.27■□□□□ 0.36
SHOX2O60902 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC17.27■□□□□ 0.36
SHOX2O60902 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SHOX2O60902 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC17.27■□□□□ 0.36
SHOX2O60902 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHOX2O60902 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.36
SHOX2O60902 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SHOX2O60902 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
SHOX2O60902 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.27■□□□□ 0.35
SHOX2O60902 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SHOX2O60902 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SHOX2O60902 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.27■□□□□ 0.35
SHOX2O60902 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SHOX2O60902 AC096733.2-201ENST00000609937 1394 ntBASIC17.27■□□□□ 0.35
SHOX2O60902 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
SHOX2O60902 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
SHOX2O60902 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC17.27■□□□□ 0.35
SHOX2O60902 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHOX2O60902 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHOX2O60902 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC17.26■□□□□ 0.35
SHOX2O60902 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SHOX2O60902 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHOX2O60902 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHOX2O60902 SUPT20HL2-201ENST00000486479 2409 ntBASIC17.26■□□□□ 0.35
SHOX2O60902 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHOX2O60902 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHOX2O60902 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHOX2O60902 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
SHOX2O60902 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.26■□□□□ 0.35
SHOX2O60902 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
SHOX2O60902 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
SHOX2O60902 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
SHOX2O60902 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHOX2O60902 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHOX2O60902 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHOX2O60902 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.26■□□□□ 0.35
SHOX2O60902 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC17.26■□□□□ 0.35
SHOX2O60902 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHOX2O60902 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
SHOX2O60902 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
SHOX2O60902 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17.26■□□□□ 0.35
SHOX2O60902 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHOX2O60902 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHOX2O60902 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC17.25■□□□□ 0.35
SHOX2O60902 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC17.25■□□□□ 0.35
SHOX2O60902 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC17.25■□□□□ 0.35
SHOX2O60902 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SHOX2O60902 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
SHOX2O60902 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC17.25■□□□□ 0.35
SHOX2O60902 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHOX2O60902 AC023157.3-201ENST00000619086 2088 ntBASIC17.25■□□□□ 0.35
SHOX2O60902 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SHOX2O60902 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHOX2O60902 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
SHOX2O60902 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHOX2O60902 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHOX2O60902 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHOX2O60902 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHOX2O60902 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SHOX2O60902 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC17.25■□□□□ 0.35
SHOX2O60902 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SHOX2O60902 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHOX2O60902 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHOX2O60902 KRT18P65-201ENST00000439811 1286 ntBASIC17.25■□□□□ 0.35
SHOX2O60902 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.25■□□□□ 0.35
SHOX2O60902 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.25■□□□□ 0.35
SHOX2O60902 AC002558.1-201ENST00000488906 803 ntBASIC17.25■□□□□ 0.35
SHOX2O60902 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC17.25■□□□□ 0.35
SHOX2O60902 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.25■□□□□ 0.35
SHOX2O60902 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC17.25■□□□□ 0.35
SHOX2O60902 AP000692.2-201ENST00000608391 879 ntBASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms