Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MSH4O15457 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
MSH4O15457 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MSH4O15457 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC19.3■□□□□ 0.68
MSH4O15457 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
MSH4O15457 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC19.3■□□□□ 0.68
MSH4O15457 HS6ST1P1-201ENST00000481504 1234 ntBASIC19.3■□□□□ 0.68
MSH4O15457 POLD4-207ENST00000531239 584 ntTSL 2 BASIC19.3■□□□□ 0.68
MSH4O15457 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC19.3■□□□□ 0.68
MSH4O15457 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC19.3■□□□□ 0.68
MSH4O15457 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC19.3■□□□□ 0.68
MSH4O15457 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC19.3■□□□□ 0.68
MSH4O15457 CYB561-216ENST00000582297 897 ntTSL 3 BASIC19.3■□□□□ 0.68
MSH4O15457 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
MSH4O15457 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC19.3■□□□□ 0.68
MSH4O15457 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC19.3■□□□□ 0.68
MSH4O15457 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
MSH4O15457 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MSH4O15457 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC19.3■□□□□ 0.68
MSH4O15457 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC19.3■□□□□ 0.68
MSH4O15457 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
MSH4O15457 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MSH4O15457 AC002310.6-201ENST00000624451 1377 ntBASIC19.3■□□□□ 0.68
MSH4O15457 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC19.3■□□□□ 0.68
MSH4O15457 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
MSH4O15457 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC19.3■□□□□ 0.68
MSH4O15457 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSH4O15457 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSH4O15457 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSH4O15457 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MSH4O15457 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MSH4O15457 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MSH4O15457 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSH4O15457 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MSH4O15457 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSH4O15457 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSH4O15457 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSH4O15457 CEP83-AS1-201ENST00000623122 2482 ntBASIC19.29■□□□□ 0.68
MSH4O15457 LETM1P2-201ENST00000597330 2178 ntBASIC19.29■□□□□ 0.68
MSH4O15457 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
MSH4O15457 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
MSH4O15457 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
MSH4O15457 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSH4O15457 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC19.29■□□□□ 0.68
MSH4O15457 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC19.29■□□□□ 0.68
MSH4O15457 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
MSH4O15457 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
MSH4O15457 AL591424.1-201ENST00000442569 1213 ntBASIC19.29■□□□□ 0.68
MSH4O15457 KRT18P3-201ENST00000451602 1288 ntBASIC19.29■□□□□ 0.68
MSH4O15457 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC19.29■□□□□ 0.68
MSH4O15457 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSH4O15457 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC19.29■□□□□ 0.68
MSH4O15457 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSH4O15457 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
MSH4O15457 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSH4O15457 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSH4O15457 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MSH4O15457 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
MSH4O15457 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MSH4O15457 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MSH4O15457 BCL2-203ENST00000589955 5011 ntBASIC19.29■□□□□ 0.68
MSH4O15457 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSH4O15457 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSH4O15457 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
MSH4O15457 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSH4O15457 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC19.28■□□□□ 0.68
MSH4O15457 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC19.28■□□□□ 0.68
MSH4O15457 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC19.28■□□□□ 0.68
MSH4O15457 STX3-203ENST00000529177 1571 ntTSL 2 BASIC19.28■□□□□ 0.68
MSH4O15457 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MSH4O15457 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSH4O15457 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSH4O15457 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MSH4O15457 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MSH4O15457 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC19.28■□□□□ 0.68
MSH4O15457 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC19.28■□□□□ 0.68
MSH4O15457 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSH4O15457 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
MSH4O15457 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
MSH4O15457 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC19.28■□□□□ 0.68
MSH4O15457 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC19.28■□□□□ 0.68
MSH4O15457 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC19.28■□□□□ 0.68
MSH4O15457 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
MSH4O15457 PGAM5P1-201ENST00000518923 814 ntBASIC19.28■□□□□ 0.68
MSH4O15457 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC19.28■□□□□ 0.68
MSH4O15457 DUX4L17-201ENST00000557360 1267 ntBASIC19.28■□□□□ 0.68
MSH4O15457 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC19.28■□□□□ 0.68
MSH4O15457 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
MSH4O15457 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSH4O15457 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MSH4O15457 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSH4O15457 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC19.28■□□□□ 0.68
MSH4O15457 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSH4O15457 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MSH4O15457 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSH4O15457 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSH4O15457 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MSH4O15457 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC19.27■□□□□ 0.68
MSH4O15457 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
MSH4O15457 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms