Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC3O15379 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC3O15379 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.81■□□□□ 0.28
HDAC3O15379 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC3O15379 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC3O15379 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC3O15379 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC16.81■□□□□ 0.28
HDAC3O15379 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC3O15379 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
HDAC3O15379 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC3O15379 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC16.81■□□□□ 0.28
HDAC3O15379 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC16.81■□□□□ 0.28
HDAC3O15379 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.81■□□□□ 0.28
HDAC3O15379 AC005332.3-201ENST00000589904 676 ntBASIC16.81■□□□□ 0.28
HDAC3O15379 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC16.81■□□□□ 0.28
HDAC3O15379 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
HDAC3O15379 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
HDAC3O15379 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC3O15379 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC3O15379 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
HDAC3O15379 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC3O15379 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
HDAC3O15379 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC3O15379 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC16.81■□□□□ 0.28
HDAC3O15379 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC16.81■□□□□ 0.28
HDAC3O15379 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
HDAC3O15379 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC3O15379 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC3O15379 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.81■□□□□ 0.28
HDAC3O15379 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.81■□□□□ 0.28
HDAC3O15379 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
HDAC3O15379 PCDHA1-201ENST00000378133 2726 ntBASIC16.81■□□□□ 0.28
HDAC3O15379 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC3O15379 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC3O15379 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC3O15379 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC3O15379 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC3O15379 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC3O15379 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
HDAC3O15379 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.8■□□□□ 0.28
HDAC3O15379 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.8■□□□□ 0.28
HDAC3O15379 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC3O15379 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC3O15379 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC3O15379 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
HDAC3O15379 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
HDAC3O15379 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC3O15379 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.8■□□□□ 0.28
HDAC3O15379 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC3O15379 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC3O15379 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
HDAC3O15379 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC16.8■□□□□ 0.28
HDAC3O15379 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC16.8■□□□□ 0.28
HDAC3O15379 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC3O15379 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC16.8■□□□□ 0.28
HDAC3O15379 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC3O15379 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC16.8■□□□□ 0.28
HDAC3O15379 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC16.8■□□□□ 0.28
HDAC3O15379 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC16.8■□□□□ 0.28
HDAC3O15379 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
HDAC3O15379 AL390719.2-201ENST00000606993 987 ntBASIC16.8■□□□□ 0.28
HDAC3O15379 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC16.8■□□□□ 0.28
HDAC3O15379 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC16.8■□□□□ 0.28
HDAC3O15379 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC3O15379 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC3O15379 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.8■□□□□ 0.28
HDAC3O15379 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.8■□□□□ 0.28
HDAC3O15379 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.8■□□□□ 0.28
HDAC3O15379 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC3O15379 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
HDAC3O15379 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC3O15379 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.8■□□□□ 0.28
HDAC3O15379 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
HDAC3O15379 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC16.8■□□□□ 0.28
HDAC3O15379 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
HDAC3O15379 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC3O15379 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC3O15379 AL662844.4-201ENST00000606367 2838 ntBASIC16.79■□□□□ 0.28
HDAC3O15379 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC3O15379 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC3O15379 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
HDAC3O15379 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC3O15379 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC3O15379 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
HDAC3O15379 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC3O15379 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
HDAC3O15379 AL513523.2-202ENST00000427283 2040 ntBASIC16.79■□□□□ 0.28
HDAC3O15379 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC3O15379 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC3O15379 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC3O15379 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.79■□□□□ 0.28
HDAC3O15379 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.79■□□□□ 0.28
HDAC3O15379 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC16.79■□□□□ 0.28
HDAC3O15379 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC3O15379 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC3O15379 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
HDAC3O15379 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC3O15379 SLC25A3P1-201ENST00000443844 931 ntBASIC16.79■□□□□ 0.28
HDAC3O15379 GXYLT1P3-201ENST00000453058 1193 ntBASIC16.79■□□□□ 0.28
HDAC3O15379 AC122714.2-201ENST00000502787 707 ntBASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms