Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.62■□□□□ 0.25
SLC28A1O00337 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SLC28A1O00337 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
SLC28A1O00337 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SLC28A1O00337 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SLC28A1O00337 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SLC28A1O00337 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SLC28A1O00337 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
SLC28A1O00337 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SLC28A1O00337 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC16.62■□□□□ 0.25
SLC28A1O00337 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SLC28A1O00337 FXN-203ENST00000396366 922 ntTSL 2 BASIC16.62■□□□□ 0.25
SLC28A1O00337 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SLC28A1O00337 AC091607.1-201ENST00000490318 1060 ntBASIC16.62■□□□□ 0.25
SLC28A1O00337 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SLC28A1O00337 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.62■□□□□ 0.25
SLC28A1O00337 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SLC28A1O00337 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.62■□□□□ 0.25
SLC28A1O00337 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SLC28A1O00337 FLJ38576-201ENST00000623820 2459 ntBASIC16.62■□□□□ 0.25
SLC28A1O00337 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.62■□□□□ 0.25
SLC28A1O00337 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.62■□□□□ 0.25
SLC28A1O00337 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
SLC28A1O00337 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
SLC28A1O00337 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SLC28A1O00337 PCDHA14-201ENST00000506751 2298 ntBASIC16.62■□□□□ 0.25
SLC28A1O00337 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SLC28A1O00337 AC016734.2-201ENST00000624325 1377 ntBASIC16.62■□□□□ 0.25
SLC28A1O00337 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.62■□□□□ 0.25
SLC28A1O00337 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
SLC28A1O00337 AC092068.3-201ENST00000587894 2016 ntBASIC16.62■□□□□ 0.25
SLC28A1O00337 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SLC28A1O00337 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
SLC28A1O00337 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SLC28A1O00337 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SLC28A1O00337 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
SLC28A1O00337 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SLC28A1O00337 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SLC28A1O00337 GPR89P-201ENST00000407924 1495 ntBASIC16.61■□□□□ 0.25
SLC28A1O00337 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
SLC28A1O00337 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
SLC28A1O00337 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.61■□□□□ 0.25
SLC28A1O00337 AC132938.5-201ENST00000624980 1813 ntBASIC16.61■□□□□ 0.25
SLC28A1O00337 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SLC28A1O00337 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SLC28A1O00337 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
SLC28A1O00337 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SLC28A1O00337 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
SLC28A1O00337 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
SLC28A1O00337 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
SLC28A1O00337 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SLC28A1O00337 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SLC28A1O00337 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SLC28A1O00337 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SLC28A1O00337 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
SLC28A1O00337 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC16.61■□□□□ 0.25
SLC28A1O00337 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC16.61■□□□□ 0.25
SLC28A1O00337 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC16.61■□□□□ 0.25
SLC28A1O00337 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC16.61■□□□□ 0.25
SLC28A1O00337 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
SLC28A1O00337 PTK2-216ENST00000519881 863 ntTSL 3 BASIC16.61■□□□□ 0.25
SLC28A1O00337 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC16.61■□□□□ 0.25
SLC28A1O00337 AC073592.5-201ENST00000624854 528 ntBASIC16.61■□□□□ 0.25
SLC28A1O00337 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC16.61■□□□□ 0.25
SLC28A1O00337 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SLC28A1O00337 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.61■□□□□ 0.25
SLC28A1O00337 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.61■□□□□ 0.25
SLC28A1O00337 AC005332.1-201ENST00000577698 1310 ntBASIC16.61■□□□□ 0.25
SLC28A1O00337 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.61■□□□□ 0.25
SLC28A1O00337 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SLC28A1O00337 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC16.61■□□□□ 0.25
SLC28A1O00337 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
SLC28A1O00337 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SLC28A1O00337 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC16.61■□□□□ 0.25
SLC28A1O00337 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.61■□□□□ 0.25
SLC28A1O00337 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.61■□□□□ 0.25
SLC28A1O00337 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SLC28A1O00337 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SLC28A1O00337 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
SLC28A1O00337 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.61■□□□□ 0.25
SLC28A1O00337 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SLC28A1O00337 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SLC28A1O00337 TP73-AS1-210ENST00000637775 1455 ntBASIC16.61■□□□□ 0.25
SLC28A1O00337 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
SLC28A1O00337 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SLC28A1O00337 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SLC28A1O00337 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SLC28A1O00337 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.6■□□□□ 0.25
SLC28A1O00337 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.6■□□□□ 0.25
SLC28A1O00337 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SLC28A1O00337 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SLC28A1O00337 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SLC28A1O00337 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
SLC28A1O00337 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC16.6■□□□□ 0.25
SLC28A1O00337 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.6■□□□□ 0.25
SLC28A1O00337 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC16.6■□□□□ 0.25
SLC28A1O00337 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SLC28A1O00337 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SLC28A1O00337 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC16.6■□□□□ 0.25
SLC28A1O00337 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms