Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC20.74■□□□□ 0.91
ZC3H4Q9UPT8 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
ZC3H4Q9UPT8 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
ZC3H4Q9UPT8 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
ZC3H4Q9UPT8 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
ZC3H4Q9UPT8 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC20.74■□□□□ 0.91
ZC3H4Q9UPT8 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
ZC3H4Q9UPT8 AL132655.2-201ENST00000596276 594 ntBASIC20.74■□□□□ 0.91
ZC3H4Q9UPT8 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
ZC3H4Q9UPT8 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC20.74■□□□□ 0.91
ZC3H4Q9UPT8 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC20.74■□□□□ 0.91
ZC3H4Q9UPT8 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ZC3H4Q9UPT8 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
ZC3H4Q9UPT8 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
ZC3H4Q9UPT8 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC20.73■□□□□ 0.91
ZC3H4Q9UPT8 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC20.73■□□□□ 0.91
ZC3H4Q9UPT8 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ZC3H4Q9UPT8 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC20.73■□□□□ 0.91
ZC3H4Q9UPT8 WASH6P-202ENST00000359512 1437 ntBASIC20.73■□□□□ 0.91
ZC3H4Q9UPT8 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ZC3H4Q9UPT8 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ZC3H4Q9UPT8 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ZC3H4Q9UPT8 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC20.73■□□□□ 0.91
ZC3H4Q9UPT8 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ZC3H4Q9UPT8 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
ZC3H4Q9UPT8 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ZC3H4Q9UPT8 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ZC3H4Q9UPT8 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
ZC3H4Q9UPT8 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
ZC3H4Q9UPT8 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ZC3H4Q9UPT8 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ZC3H4Q9UPT8 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC20.73■□□□□ 0.91
ZC3H4Q9UPT8 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
ZC3H4Q9UPT8 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
ZC3H4Q9UPT8 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ZC3H4Q9UPT8 NOP2-211ENST00000540228 668 ntTSL 2 BASIC20.73■□□□□ 0.91
ZC3H4Q9UPT8 MIR4453-201ENST00000584019 89 ntBASIC20.73■□□□□ 0.91
ZC3H4Q9UPT8 Six3os1_5.1-201ENST00000611000 271 ntBASIC20.73■□□□□ 0.91
ZC3H4Q9UPT8 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC20.73■□□□□ 0.91
ZC3H4Q9UPT8 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
ZC3H4Q9UPT8 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ZC3H4Q9UPT8 AC005332.8-201ENST00000622750 2735 ntBASIC20.72■□□□□ 0.91
ZC3H4Q9UPT8 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ZC3H4Q9UPT8 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
ZC3H4Q9UPT8 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC20.72■□□□□ 0.91
ZC3H4Q9UPT8 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
ZC3H4Q9UPT8 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
ZC3H4Q9UPT8 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
ZC3H4Q9UPT8 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
ZC3H4Q9UPT8 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
ZC3H4Q9UPT8 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
ZC3H4Q9UPT8 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
ZC3H4Q9UPT8 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
ZC3H4Q9UPT8 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
ZC3H4Q9UPT8 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC20.72■□□□□ 0.91
ZC3H4Q9UPT8 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
ZC3H4Q9UPT8 HMGA1P7-201ENST00000406908 502 ntBASIC20.72■□□□□ 0.91
ZC3H4Q9UPT8 AL353779.1-201ENST00000434793 351 ntBASIC20.72■□□□□ 0.91
ZC3H4Q9UPT8 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
ZC3H4Q9UPT8 ACA64.2-201ENST00000459014 129 ntBASIC20.72■□□□□ 0.91
ZC3H4Q9UPT8 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
ZC3H4Q9UPT8 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC20.72■□□□□ 0.91
ZC3H4Q9UPT8 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC20.72■□□□□ 0.91
ZC3H4Q9UPT8 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
ZC3H4Q9UPT8 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ZC3H4Q9UPT8 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ZC3H4Q9UPT8 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ZC3H4Q9UPT8 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC20.72■□□□□ 0.91
ZC3H4Q9UPT8 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ZC3H4Q9UPT8 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC20.71■□□□□ 0.91
ZC3H4Q9UPT8 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
ZC3H4Q9UPT8 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
ZC3H4Q9UPT8 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
ZC3H4Q9UPT8 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ZC3H4Q9UPT8 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC20.71■□□□□ 0.91
ZC3H4Q9UPT8 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
ZC3H4Q9UPT8 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ZC3H4Q9UPT8 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ZC3H4Q9UPT8 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
ZC3H4Q9UPT8 AC079776.1-201ENST00000401540 1152 ntBASIC20.71■□□□□ 0.91
ZC3H4Q9UPT8 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC20.71■□□□□ 0.91
ZC3H4Q9UPT8 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC20.71■□□□□ 0.91
ZC3H4Q9UPT8 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC20.71■□□□□ 0.91
ZC3H4Q9UPT8 AC005412.3-201ENST00000580309 715 ntBASIC20.71■□□□□ 0.91
ZC3H4Q9UPT8 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC20.71■□□□□ 0.91
ZC3H4Q9UPT8 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
ZC3H4Q9UPT8 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ZC3H4Q9UPT8 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ZC3H4Q9UPT8 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
ZC3H4Q9UPT8 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ZC3H4Q9UPT8 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
ZC3H4Q9UPT8 ANO7L1-203ENST00000602586 1720 ntBASIC20.7■□□□□ 0.9
ZC3H4Q9UPT8 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
ZC3H4Q9UPT8 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
ZC3H4Q9UPT8 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
ZC3H4Q9UPT8 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC20.7■□□□□ 0.9
ZC3H4Q9UPT8 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ZC3H4Q9UPT8 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
ZC3H4Q9UPT8 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC20.7■□□□□ 0.9
ZC3H4Q9UPT8 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms