Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC17.93■□□□□ 0.46
AP4E1Q9UPM8 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
AP4E1Q9UPM8 FGFR3P6-201ENST00000457012 610 ntBASIC17.93■□□□□ 0.46
AP4E1Q9UPM8 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.93■□□□□ 0.46
AP4E1Q9UPM8 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC17.93■□□□□ 0.46
AP4E1Q9UPM8 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
AP4E1Q9UPM8 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC17.93■□□□□ 0.46
AP4E1Q9UPM8 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
AP4E1Q9UPM8 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
AP4E1Q9UPM8 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
AP4E1Q9UPM8 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
AP4E1Q9UPM8 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
AP4E1Q9UPM8 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
AP4E1Q9UPM8 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
AP4E1Q9UPM8 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
AP4E1Q9UPM8 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
AP4E1Q9UPM8 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
AP4E1Q9UPM8 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.93■□□□□ 0.46
AP4E1Q9UPM8 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.93■□□□□ 0.46
AP4E1Q9UPM8 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC17.92■□□□□ 0.46
AP4E1Q9UPM8 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
AP4E1Q9UPM8 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
AP4E1Q9UPM8 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.92■□□□□ 0.46
AP4E1Q9UPM8 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
AP4E1Q9UPM8 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
AP4E1Q9UPM8 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.92■□□□□ 0.46
AP4E1Q9UPM8 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
AP4E1Q9UPM8 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC17.92■□□□□ 0.46
AP4E1Q9UPM8 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.92■□□□□ 0.46
AP4E1Q9UPM8 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC17.92■□□□□ 0.46
AP4E1Q9UPM8 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.92■□□□□ 0.46
AP4E1Q9UPM8 UNC93B7-201ENST00000509439 705 ntBASIC17.92■□□□□ 0.46
AP4E1Q9UPM8 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.92■□□□□ 0.46
AP4E1Q9UPM8 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17.92■□□□□ 0.46
AP4E1Q9UPM8 AL022326.1-202ENST00000641533 845 ntBASIC17.92■□□□□ 0.46
AP4E1Q9UPM8 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
AP4E1Q9UPM8 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
AP4E1Q9UPM8 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
AP4E1Q9UPM8 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
AP4E1Q9UPM8 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
AP4E1Q9UPM8 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
AP4E1Q9UPM8 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
AP4E1Q9UPM8 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
AP4E1Q9UPM8 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
AP4E1Q9UPM8 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC17.92■□□□□ 0.46
AP4E1Q9UPM8 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
AP4E1Q9UPM8 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.92■□□□□ 0.46
AP4E1Q9UPM8 AC092053.1-201ENST00000605787 1936 ntBASIC17.92■□□□□ 0.46
AP4E1Q9UPM8 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
AP4E1Q9UPM8 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 AC022211.2-201ENST00000585075 2527 ntBASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 LINC00982-205ENST00000420957 435 ntBASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 PRYP5-201ENST00000451909 266 ntBASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 AF238378.1-201ENST00000526806 358 ntBASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 SART3-203ENST00000546611 1184 ntBASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
AP4E1Q9UPM8 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
AP4E1Q9UPM8 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
AP4E1Q9UPM8 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
AP4E1Q9UPM8 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
AP4E1Q9UPM8 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
AP4E1Q9UPM8 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
AP4E1Q9UPM8 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
AP4E1Q9UPM8 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
AP4E1Q9UPM8 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
AP4E1Q9UPM8 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
AP4E1Q9UPM8 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
AP4E1Q9UPM8 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
AP4E1Q9UPM8 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC17.9■□□□□ 0.46
AP4E1Q9UPM8 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
AP4E1Q9UPM8 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
AP4E1Q9UPM8 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms