Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC32.6■■■□□ 2.81
SHROOM4Q9ULL8 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC32.6■■■□□ 2.81
SHROOM4Q9ULL8 BSG-214ENST00000614867 960 ntTSL 3 BASIC32.6■■■□□ 2.81
SHROOM4Q9ULL8 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC32.6■■■□□ 2.81
SHROOM4Q9ULL8 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
SHROOM4Q9ULL8 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
SHROOM4Q9ULL8 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC32.59■■■□□ 2.81
SHROOM4Q9ULL8 AC135050.7-201ENST00000624508 2218 ntBASIC32.59■■■□□ 2.81
SHROOM4Q9ULL8 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC32.59■■■□□ 2.81
SHROOM4Q9ULL8 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
SHROOM4Q9ULL8 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC32.59■■■□□ 2.81
SHROOM4Q9ULL8 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
SHROOM4Q9ULL8 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC32.59■■■□□ 2.81
SHROOM4Q9ULL8 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC32.59■■■□□ 2.81
SHROOM4Q9ULL8 TUBB3P1-201ENST00000405796 1332 ntBASIC32.59■■■□□ 2.81
SHROOM4Q9ULL8 MYCLP1-201ENST00000372451 1075 ntBASIC32.59■■■□□ 2.81
SHROOM4Q9ULL8 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
SHROOM4Q9ULL8 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC32.59■■■□□ 2.81
SHROOM4Q9ULL8 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
SHROOM4Q9ULL8 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
SHROOM4Q9ULL8 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
SHROOM4Q9ULL8 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC32.59■■■□□ 2.81
SHROOM4Q9ULL8 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
SHROOM4Q9ULL8 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC32.59■■■□□ 2.81
SHROOM4Q9ULL8 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
SHROOM4Q9ULL8 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
SHROOM4Q9ULL8 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC32.58■■■□□ 2.81
SHROOM4Q9ULL8 CALY-202ENST00000368555 783 ntTSL 2 BASIC32.58■■■□□ 2.81
SHROOM4Q9ULL8 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC32.58■■■□□ 2.81
SHROOM4Q9ULL8 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC32.58■■■□□ 2.81
SHROOM4Q9ULL8 AC025048.6-201ENST00000634326 1161 ntBASIC32.58■■■□□ 2.81
SHROOM4Q9ULL8 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC32.58■■■□□ 2.81
SHROOM4Q9ULL8 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC32.58■■■□□ 2.81
SHROOM4Q9ULL8 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC32.58■■■□□ 2.81
SHROOM4Q9ULL8 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.81
SHROOM4Q9ULL8 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC32.57■■■□□ 2.8
SHROOM4Q9ULL8 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC32.57■■■□□ 2.8
SHROOM4Q9ULL8 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC32.57■■■□□ 2.8
SHROOM4Q9ULL8 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
SHROOM4Q9ULL8 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
SHROOM4Q9ULL8 NME9-203ENST00000383180 2133 ntTSL 2 BASIC32.57■■■□□ 2.8
SHROOM4Q9ULL8 MIR943-201ENST00000401286 94 ntBASIC32.57■■■□□ 2.8
SHROOM4Q9ULL8 ACTG1P4-201ENST00000425123 1122 ntBASIC32.57■■■□□ 2.8
SHROOM4Q9ULL8 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC32.57■■■□□ 2.8
SHROOM4Q9ULL8 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
SHROOM4Q9ULL8 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC32.57■■■□□ 2.8
SHROOM4Q9ULL8 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC32.57■■■□□ 2.8
SHROOM4Q9ULL8 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC32.57■■■□□ 2.8
SHROOM4Q9ULL8 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC32.57■■■□□ 2.8
SHROOM4Q9ULL8 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
SHROOM4Q9ULL8 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC32.57■■■□□ 2.8
SHROOM4Q9ULL8 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC32.57■■■□□ 2.8
SHROOM4Q9ULL8 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC32.57■■■□□ 2.8
SHROOM4Q9ULL8 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
SHROOM4Q9ULL8 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC32.57■■■□□ 2.8
SHROOM4Q9ULL8 PI4KAP1-204ENST00000612579 1703 ntBASIC32.57■■■□□ 2.8
SHROOM4Q9ULL8 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
SHROOM4Q9ULL8 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
SHROOM4Q9ULL8 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
SHROOM4Q9ULL8 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
SHROOM4Q9ULL8 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC32.56■■■□□ 2.8
SHROOM4Q9ULL8 AC140658.5-201ENST00000438532 169 ntBASIC32.56■■■□□ 2.8
SHROOM4Q9ULL8 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
SHROOM4Q9ULL8 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC32.56■■■□□ 2.8
SHROOM4Q9ULL8 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC32.56■■■□□ 2.8
SHROOM4Q9ULL8 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC32.56■■■□□ 2.8
SHROOM4Q9ULL8 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC32.56■■■□□ 2.8
SHROOM4Q9ULL8 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC32.56■■■□□ 2.8
SHROOM4Q9ULL8 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC32.56■■■□□ 2.8
SHROOM4Q9ULL8 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC32.56■■■□□ 2.8
SHROOM4Q9ULL8 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC32.56■■■□□ 2.8
SHROOM4Q9ULL8 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
SHROOM4Q9ULL8 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC32.56■■■□□ 2.8
SHROOM4Q9ULL8 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC32.56■■■□□ 2.8
SHROOM4Q9ULL8 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC32.56■■■□□ 2.8
SHROOM4Q9ULL8 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC32.56■■■□□ 2.8
SHROOM4Q9ULL8 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
SHROOM4Q9ULL8 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC32.56■■■□□ 2.8
SHROOM4Q9ULL8 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC32.55■■■□□ 2.8
SHROOM4Q9ULL8 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC32.55■■■□□ 2.8
SHROOM4Q9ULL8 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC32.55■■■□□ 2.8
SHROOM4Q9ULL8 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
SHROOM4Q9ULL8 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
SHROOM4Q9ULL8 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC32.55■■■□□ 2.8
SHROOM4Q9ULL8 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC32.55■■■□□ 2.8
SHROOM4Q9ULL8 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC32.55■■■□□ 2.8
SHROOM4Q9ULL8 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC32.55■■■□□ 2.8
SHROOM4Q9ULL8 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC32.55■■■□□ 2.8
SHROOM4Q9ULL8 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC32.55■■■□□ 2.8
SHROOM4Q9ULL8 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC32.55■■■□□ 2.8
SHROOM4Q9ULL8 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC32.55■■■□□ 2.8
SHROOM4Q9ULL8 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
SHROOM4Q9ULL8 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC32.55■■■□□ 2.8
SHROOM4Q9ULL8 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC32.55■■■□□ 2.8
SHROOM4Q9ULL8 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC32.55■■■□□ 2.8
SHROOM4Q9ULL8 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC32.54■■■□□ 2.8
SHROOM4Q9ULL8 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
SHROOM4Q9ULL8 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
SHROOM4Q9ULL8 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
SHROOM4Q9ULL8 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms