Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
NDE1Q9NXR1 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
NDE1Q9NXR1 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC16.77■□□□□ 0.28
NDE1Q9NXR1 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
NDE1Q9NXR1 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
NDE1Q9NXR1 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
NDE1Q9NXR1 AC078925.2-201ENST00000624013 1973 ntBASIC16.77■□□□□ 0.28
NDE1Q9NXR1 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
NDE1Q9NXR1 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC16.77■□□□□ 0.28
NDE1Q9NXR1 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
NDE1Q9NXR1 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
NDE1Q9NXR1 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC16.77■□□□□ 0.28
NDE1Q9NXR1 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
NDE1Q9NXR1 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
NDE1Q9NXR1 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
NDE1Q9NXR1 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
NDE1Q9NXR1 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC16.77■□□□□ 0.28
NDE1Q9NXR1 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC16.77■□□□□ 0.28
NDE1Q9NXR1 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC16.77■□□□□ 0.28
NDE1Q9NXR1 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC16.77■□□□□ 0.28
NDE1Q9NXR1 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC16.77■□□□□ 0.28
NDE1Q9NXR1 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
NDE1Q9NXR1 BX088651.1-201ENST00000540551 451 ntBASIC16.77■□□□□ 0.28
NDE1Q9NXR1 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC16.77■□□□□ 0.28
NDE1Q9NXR1 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
NDE1Q9NXR1 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
NDE1Q9NXR1 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC16.77■□□□□ 0.28
NDE1Q9NXR1 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
NDE1Q9NXR1 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
NDE1Q9NXR1 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
NDE1Q9NXR1 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
NDE1Q9NXR1 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
NDE1Q9NXR1 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
NDE1Q9NXR1 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
NDE1Q9NXR1 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
NDE1Q9NXR1 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC16.77■□□□□ 0.27
NDE1Q9NXR1 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.77■□□□□ 0.27
NDE1Q9NXR1 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
NDE1Q9NXR1 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
NDE1Q9NXR1 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
NDE1Q9NXR1 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.76■□□□□ 0.27
NDE1Q9NXR1 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NDE1Q9NXR1 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NDE1Q9NXR1 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
NDE1Q9NXR1 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NDE1Q9NXR1 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
NDE1Q9NXR1 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NDE1Q9NXR1 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NDE1Q9NXR1 AC024909.3-201ENST00000611513 2257 ntBASIC16.76■□□□□ 0.27
NDE1Q9NXR1 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
NDE1Q9NXR1 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
NDE1Q9NXR1 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NDE1Q9NXR1 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
NDE1Q9NXR1 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
NDE1Q9NXR1 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
NDE1Q9NXR1 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC16.76■□□□□ 0.27
NDE1Q9NXR1 CCR12P-201ENST00000446203 998 ntBASIC16.76■□□□□ 0.27
NDE1Q9NXR1 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
NDE1Q9NXR1 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC16.76■□□□□ 0.27
NDE1Q9NXR1 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
NDE1Q9NXR1 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
NDE1Q9NXR1 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC16.76■□□□□ 0.27
NDE1Q9NXR1 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
NDE1Q9NXR1 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
NDE1Q9NXR1 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
NDE1Q9NXR1 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.76■□□□□ 0.27
NDE1Q9NXR1 KRT8P9-201ENST00000558927 1449 ntBASIC16.76■□□□□ 0.27
NDE1Q9NXR1 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NDE1Q9NXR1 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
NDE1Q9NXR1 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NDE1Q9NXR1 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.76■□□□□ 0.27
NDE1Q9NXR1 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
NDE1Q9NXR1 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
NDE1Q9NXR1 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
NDE1Q9NXR1 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
NDE1Q9NXR1 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
NDE1Q9NXR1 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
NDE1Q9NXR1 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
NDE1Q9NXR1 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC16.75■□□□□ 0.27
NDE1Q9NXR1 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
NDE1Q9NXR1 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.75■□□□□ 0.27
NDE1Q9NXR1 PBK-203ENST00000522944 1499 ntTSL 2 BASIC16.75■□□□□ 0.27
NDE1Q9NXR1 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
NDE1Q9NXR1 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
NDE1Q9NXR1 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NDE1Q9NXR1 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NDE1Q9NXR1 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
NDE1Q9NXR1 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
NDE1Q9NXR1 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.75■□□□□ 0.27
NDE1Q9NXR1 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
NDE1Q9NXR1 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC16.75■□□□□ 0.27
NDE1Q9NXR1 AL355802.2-201ENST00000402069 882 ntBASIC16.75■□□□□ 0.27
NDE1Q9NXR1 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC16.75■□□□□ 0.27
NDE1Q9NXR1 PVRIG2P-201ENST00000435460 978 ntBASIC16.75■□□□□ 0.27
NDE1Q9NXR1 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
NDE1Q9NXR1 SEC1P-202ENST00000473944 940 ntBASIC16.75■□□□□ 0.27
NDE1Q9NXR1 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC16.75■□□□□ 0.27
NDE1Q9NXR1 TK2-204ENST00000525974 1178 ntTSL 2 BASIC16.75■□□□□ 0.27
NDE1Q9NXR1 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC16.75■□□□□ 0.27
NDE1Q9NXR1 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms