Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SSU72Q9NP77 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC17.15■□□□□ 0.34
SSU72Q9NP77 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
SSU72Q9NP77 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SSU72Q9NP77 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC17.15■□□□□ 0.34
SSU72Q9NP77 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
SSU72Q9NP77 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.34
SSU72Q9NP77 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
SSU72Q9NP77 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SSU72Q9NP77 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SSU72Q9NP77 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SSU72Q9NP77 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.14■□□□□ 0.33
SSU72Q9NP77 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
SSU72Q9NP77 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SSU72Q9NP77 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC17.14■□□□□ 0.33
SSU72Q9NP77 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
SSU72Q9NP77 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC17.14■□□□□ 0.33
SSU72Q9NP77 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SSU72Q9NP77 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
SSU72Q9NP77 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
SSU72Q9NP77 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.14■□□□□ 0.33
SSU72Q9NP77 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
SSU72Q9NP77 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SSU72Q9NP77 BAALC-201ENST00000297574 801 ntTSL 3 BASIC17.14■□□□□ 0.33
SSU72Q9NP77 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SSU72Q9NP77 MIR662-201ENST00000384847 95 ntBASIC17.14■□□□□ 0.33
SSU72Q9NP77 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
SSU72Q9NP77 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC17.14■□□□□ 0.33
SSU72Q9NP77 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC17.14■□□□□ 0.33
SSU72Q9NP77 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.14■□□□□ 0.33
SSU72Q9NP77 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17.14■□□□□ 0.33
SSU72Q9NP77 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
SSU72Q9NP77 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SSU72Q9NP77 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC17.14■□□□□ 0.33
SSU72Q9NP77 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC17.14■□□□□ 0.33
SSU72Q9NP77 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
SSU72Q9NP77 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
SSU72Q9NP77 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC17.14■□□□□ 0.33
SSU72Q9NP77 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC17.14■□□□□ 0.33
SSU72Q9NP77 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SSU72Q9NP77 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SSU72Q9NP77 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
SSU72Q9NP77 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SSU72Q9NP77 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SSU72Q9NP77 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SSU72Q9NP77 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC17.14■□□□□ 0.33
SSU72Q9NP77 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SSU72Q9NP77 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SSU72Q9NP77 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
SSU72Q9NP77 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SSU72Q9NP77 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SSU72Q9NP77 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.13■□□□□ 0.33
SSU72Q9NP77 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
SSU72Q9NP77 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC17.13■□□□□ 0.33
SSU72Q9NP77 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SSU72Q9NP77 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
SSU72Q9NP77 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
SSU72Q9NP77 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SSU72Q9NP77 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SSU72Q9NP77 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.13■□□□□ 0.33
SSU72Q9NP77 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SSU72Q9NP77 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.13■□□□□ 0.33
SSU72Q9NP77 AC006538.1-201ENST00000567905 1585 ntBASIC17.13■□□□□ 0.33
SSU72Q9NP77 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
SSU72Q9NP77 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SSU72Q9NP77 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC17.13■□□□□ 0.33
SSU72Q9NP77 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.13■□□□□ 0.33
SSU72Q9NP77 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SSU72Q9NP77 AL135999.2-201ENST00000622438 1686 ntBASIC17.13■□□□□ 0.33
SSU72Q9NP77 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC17.13■□□□□ 0.33
SSU72Q9NP77 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SSU72Q9NP77 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SSU72Q9NP77 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SSU72Q9NP77 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SSU72Q9NP77 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.12■□□□□ 0.33
SSU72Q9NP77 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
SSU72Q9NP77 AC008741.2-201ENST00000612792 3115 ntBASIC17.12■□□□□ 0.33
SSU72Q9NP77 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC17.12■□□□□ 0.33
SSU72Q9NP77 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SSU72Q9NP77 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SSU72Q9NP77 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SSU72Q9NP77 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC17.12■□□□□ 0.33
SSU72Q9NP77 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SSU72Q9NP77 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SSU72Q9NP77 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SSU72Q9NP77 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
SSU72Q9NP77 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
SSU72Q9NP77 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SSU72Q9NP77 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC17.12■□□□□ 0.33
SSU72Q9NP77 MMP23A-201ENST00000234610 1017 ntBASIC17.12■□□□□ 0.33
SSU72Q9NP77 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.12■□□□□ 0.33
SSU72Q9NP77 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SSU72Q9NP77 STARP1-201ENST00000397973 869 ntBASIC17.12■□□□□ 0.33
SSU72Q9NP77 HLA-J-202ENST00000469281 1241 ntBASIC17.12■□□□□ 0.33
SSU72Q9NP77 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC17.12■□□□□ 0.33
SSU72Q9NP77 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.12■□□□□ 0.33
SSU72Q9NP77 ZNF444P1-201ENST00000559497 298 ntBASIC17.12■□□□□ 0.33
SSU72Q9NP77 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC17.12■□□□□ 0.33
SSU72Q9NP77 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC17.12■□□□□ 0.33
SSU72Q9NP77 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms