Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS35Q96QK1 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.15■□□□□ 0.34
VPS35Q96QK1 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
VPS35Q96QK1 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
VPS35Q96QK1 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS35Q96QK1 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS35Q96QK1 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.15■□□□□ 0.34
VPS35Q96QK1 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS35Q96QK1 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS35Q96QK1 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VPS35Q96QK1 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS35Q96QK1 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VPS35Q96QK1 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS35Q96QK1 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.15■□□□□ 0.34
VPS35Q96QK1 KRT18P27-201ENST00000427733 1299 ntBASIC17.15■□□□□ 0.34
VPS35Q96QK1 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC17.15■□□□□ 0.34
VPS35Q96QK1 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.15■□□□□ 0.34
VPS35Q96QK1 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS35Q96QK1 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.15■□□□□ 0.34
VPS35Q96QK1 PENK-208ENST00000523051 772 ntTSL 5 BASIC17.15■□□□□ 0.34
VPS35Q96QK1 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.15■□□□□ 0.34
VPS35Q96QK1 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.15■□□□□ 0.34
VPS35Q96QK1 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC17.15■□□□□ 0.34
VPS35Q96QK1 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.15■□□□□ 0.34
VPS35Q96QK1 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
VPS35Q96QK1 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
VPS35Q96QK1 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC17.15■□□□□ 0.34
VPS35Q96QK1 HLA-A-201ENST00000376802 1334 ntBASIC17.15■□□□□ 0.34
VPS35Q96QK1 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
VPS35Q96QK1 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS35Q96QK1 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS35Q96QK1 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
VPS35Q96QK1 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
VPS35Q96QK1 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.15■□□□□ 0.34
VPS35Q96QK1 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.14■□□□□ 0.34
VPS35Q96QK1 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.34
VPS35Q96QK1 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS35Q96QK1 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.14■□□□□ 0.33
VPS35Q96QK1 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS35Q96QK1 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
VPS35Q96QK1 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS35Q96QK1 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
VPS35Q96QK1 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS35Q96QK1 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VPS35Q96QK1 AC012313.1-201ENST00000593393 3059 ntBASIC17.14■□□□□ 0.33
VPS35Q96QK1 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS35Q96QK1 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC17.14■□□□□ 0.33
VPS35Q96QK1 PRKN-208ENST00000610470 531 ntTSL 2 BASIC17.14■□□□□ 0.33
VPS35Q96QK1 PRKN-209ENST00000612485 225 ntTSL 5 BASIC17.14■□□□□ 0.33
VPS35Q96QK1 MIR7706-201ENST00000613747 67 ntBASIC17.14■□□□□ 0.33
VPS35Q96QK1 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS35Q96QK1 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS35Q96QK1 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VPS35Q96QK1 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.14■□□□□ 0.33
VPS35Q96QK1 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.14■□□□□ 0.33
VPS35Q96QK1 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
VPS35Q96QK1 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17.14■□□□□ 0.33
VPS35Q96QK1 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS35Q96QK1 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS35Q96QK1 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
VPS35Q96QK1 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS35Q96QK1 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS35Q96QK1 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
VPS35Q96QK1 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.13■□□□□ 0.33
VPS35Q96QK1 AC116353.5-201ENST00000638148 1699 ntBASIC17.13■□□□□ 0.33
VPS35Q96QK1 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
VPS35Q96QK1 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC17.13■□□□□ 0.33
VPS35Q96QK1 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS35Q96QK1 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS35Q96QK1 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC17.13■□□□□ 0.33
VPS35Q96QK1 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS35Q96QK1 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS35Q96QK1 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS35Q96QK1 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17.13■□□□□ 0.33
VPS35Q96QK1 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS35Q96QK1 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS35Q96QK1 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS35Q96QK1 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC17.13■□□□□ 0.33
VPS35Q96QK1 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.13■□□□□ 0.33
VPS35Q96QK1 AC093909.1-201ENST00000504731 1122 ntBASIC17.13■□□□□ 0.33
VPS35Q96QK1 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC17.13■□□□□ 0.33
VPS35Q96QK1 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS35Q96QK1 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.13■□□□□ 0.33
VPS35Q96QK1 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC17.13■□□□□ 0.33
VPS35Q96QK1 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC17.13■□□□□ 0.33
VPS35Q96QK1 ETFA-208ENST00000559602 792 ntTSL 3 BASIC17.13■□□□□ 0.33
VPS35Q96QK1 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS35Q96QK1 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS35Q96QK1 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS35Q96QK1 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.13■□□□□ 0.33
VPS35Q96QK1 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.13■□□□□ 0.33
VPS35Q96QK1 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS35Q96QK1 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS35Q96QK1 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC17.13■□□□□ 0.33
VPS35Q96QK1 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS35Q96QK1 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS35Q96QK1 GPR89P-201ENST00000407924 1495 ntBASIC17.12■□□□□ 0.33
VPS35Q96QK1 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS35Q96QK1 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
VPS35Q96QK1 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms