Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
SNRNP40Q96DI7 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SNRNP40Q96DI7 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC15.46■□□□□ 0.07
SNRNP40Q96DI7 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
SNRNP40Q96DI7 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC15.46■□□□□ 0.07
SNRNP40Q96DI7 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SNRNP40Q96DI7 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SNRNP40Q96DI7 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
SNRNP40Q96DI7 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SNRNP40Q96DI7 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SNRNP40Q96DI7 RPL30-202ENST00000396070 440 ntTSL 2 BASIC15.46■□□□□ 0.07
SNRNP40Q96DI7 AC236430.1-201ENST00000402231 743 ntBASIC15.46■□□□□ 0.07
SNRNP40Q96DI7 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC15.46■□□□□ 0.07
SNRNP40Q96DI7 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
SNRNP40Q96DI7 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SNRNP40Q96DI7 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
SNRNP40Q96DI7 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC15.46■□□□□ 0.07
SNRNP40Q96DI7 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SNRNP40Q96DI7 NAA60-208ENST00000570819 833 ntTSL 2 BASIC15.46■□□□□ 0.07
SNRNP40Q96DI7 AP001059.3-201ENST00000619053 235 ntBASIC15.46■□□□□ 0.07
SNRNP40Q96DI7 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
SNRNP40Q96DI7 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC15.46■□□□□ 0.07
SNRNP40Q96DI7 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SNRNP40Q96DI7 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
SNRNP40Q96DI7 HARS-203ENST00000431330 1774 ntTSL 2 BASIC15.46■□□□□ 0.07
SNRNP40Q96DI7 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
SNRNP40Q96DI7 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC15.46■□□□□ 0.07
SNRNP40Q96DI7 STK4-201ENST00000372801 2038 ntTSL 2 BASIC15.46■□□□□ 0.07
SNRNP40Q96DI7 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.06
SNRNP40Q96DI7 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
SNRNP40Q96DI7 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC15.46■□□□□ 0.06
SNRNP40Q96DI7 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 COPE-202ENST00000349893 948 ntTSL 2 BASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 HNRNPA1P40-201ENST00000426371 1278 ntBASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 KLF2P3-201ENST00000451977 1087 ntBASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 OARD1-208ENST00000469104 704 ntTSL 2 BASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 TERF1P3-201ENST00000505638 1227 ntBASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 AL135744.1-201ENST00000565098 629 ntBASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SNRNP40Q96DI7 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
SNRNP40Q96DI7 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC15.44■□□□□ 0.06
SNRNP40Q96DI7 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
SNRNP40Q96DI7 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
SNRNP40Q96DI7 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SNRNP40Q96DI7 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
SNRNP40Q96DI7 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC15.44■□□□□ 0.06
SNRNP40Q96DI7 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
SNRNP40Q96DI7 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC15.44■□□□□ 0.06
SNRNP40Q96DI7 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SNRNP40Q96DI7 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SNRNP40Q96DI7 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
SNRNP40Q96DI7 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SNRNP40Q96DI7 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
SNRNP40Q96DI7 CENPM-205ENST00000404067 905 ntTSL 3 BASIC15.44■□□□□ 0.06
SNRNP40Q96DI7 RBPMS2P1-201ENST00000437762 623 ntBASIC15.44■□□□□ 0.06
SNRNP40Q96DI7 AC002472.2-201ENST00000442739 958 ntBASIC15.44■□□□□ 0.06
SNRNP40Q96DI7 TSPY16P-201ENST00000449843 468 ntBASIC15.44■□□□□ 0.06
SNRNP40Q96DI7 POLD4-211ENST00000539074 714 ntTSL 3 BASIC15.44■□□□□ 0.06
SNRNP40Q96DI7 DUX4L17-201ENST00000557360 1267 ntBASIC15.44■□□□□ 0.06
SNRNP40Q96DI7 AC087641.1-201ENST00000557561 1021 ntBASIC15.44■□□□□ 0.06
SNRNP40Q96DI7 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC15.44■□□□□ 0.06
SNRNP40Q96DI7 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC15.44■□□□□ 0.06
SNRNP40Q96DI7 RARRES2P8-201ENST00000566335 367 ntBASIC15.44■□□□□ 0.06
SNRNP40Q96DI7 RN7SL204P-201ENST00000582831 262 ntBASIC15.44■□□□□ 0.06
SNRNP40Q96DI7 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC15.44■□□□□ 0.06
SNRNP40Q96DI7 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC15.44■□□□□ 0.06
SNRNP40Q96DI7 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
SNRNP40Q96DI7 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
SNRNP40Q96DI7 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
SNRNP40Q96DI7 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms