Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 AL121761.2-201ENST00000598007 1648 ntBASIC17.26■□□□□ 0.35
HMGB4Q8WW32 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
HMGB4Q8WW32 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB4Q8WW32 AC002056.1-201ENST00000395613 760 ntBASIC17.26■□□□□ 0.35
HMGB4Q8WW32 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.26■□□□□ 0.35
HMGB4Q8WW32 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB4Q8WW32 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC17.26■□□□□ 0.35
HMGB4Q8WW32 AC109322.1-201ENST00000524499 1264 ntBASIC17.26■□□□□ 0.35
HMGB4Q8WW32 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC17.26■□□□□ 0.35
HMGB4Q8WW32 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC17.26■□□□□ 0.35
HMGB4Q8WW32 IGHV3OR16-6-201ENST00000568775 360 ntBASIC17.26■□□□□ 0.35
HMGB4Q8WW32 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC17.26■□□□□ 0.35
HMGB4Q8WW32 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
HMGB4Q8WW32 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC17.26■□□□□ 0.35
HMGB4Q8WW32 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB4Q8WW32 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
HMGB4Q8WW32 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB4Q8WW32 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB4Q8WW32 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB4Q8WW32 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB4Q8WW32 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB4Q8WW32 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC17.26■□□□□ 0.35
HMGB4Q8WW32 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB4Q8WW32 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
HMGB4Q8WW32 AC138028.4-201ENST00000564984 1845 ntBASIC17.26■□□□□ 0.35
HMGB4Q8WW32 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC17.25■□□□□ 0.35
HMGB4Q8WW32 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB4Q8WW32 AC129492.6-201ENST00000611383 1305 ntBASIC17.25■□□□□ 0.35
HMGB4Q8WW32 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
HMGB4Q8WW32 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB4Q8WW32 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
HMGB4Q8WW32 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.25■□□□□ 0.35
HMGB4Q8WW32 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB4Q8WW32 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB4Q8WW32 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
HMGB4Q8WW32 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
HMGB4Q8WW32 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB4Q8WW32 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB4Q8WW32 CD99-202ENST00000381180 530 ntTSL 2 BASIC17.25■□□□□ 0.35
HMGB4Q8WW32 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB4Q8WW32 HLA-J-203ENST00000494367 1087 ntBASIC17.25■□□□□ 0.35
HMGB4Q8WW32 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC17.25■□□□□ 0.35
HMGB4Q8WW32 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC17.25■□□□□ 0.35
HMGB4Q8WW32 SPCS2P1-201ENST00000561636 679 ntBASIC17.25■□□□□ 0.35
HMGB4Q8WW32 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC17.25■□□□□ 0.35
HMGB4Q8WW32 AL139327.4-201ENST00000612362 153 ntBASIC17.25■□□□□ 0.35
HMGB4Q8WW32 LINC00628-201ENST00000628516 1289 ntBASIC17.25■□□□□ 0.35
HMGB4Q8WW32 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC17.25■□□□□ 0.35
HMGB4Q8WW32 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC17.25■□□□□ 0.35
HMGB4Q8WW32 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB4Q8WW32 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB4Q8WW32 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB4Q8WW32 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB4Q8WW32 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB4Q8WW32 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB4Q8WW32 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB4Q8WW32 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
HMGB4Q8WW32 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC17.25■□□□□ 0.35
HMGB4Q8WW32 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.25■□□□□ 0.35
HMGB4Q8WW32 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
HMGB4Q8WW32 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB4Q8WW32 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB4Q8WW32 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 CALY-203ENST00000368558 825 ntTSL 5 BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 CBR1-202ENST00000399191 838 ntTSL 3 BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 RPL28-205ENST00000558131 444 ntTSL 5 BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 RPL28-209ENST00000560055 670 ntTSL 3 BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB4Q8WW32 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms