Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
VPS53Q5VIR6 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS53Q5VIR6 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC20.86■□□□□ 0.93
VPS53Q5VIR6 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC20.86■□□□□ 0.93
VPS53Q5VIR6 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
VPS53Q5VIR6 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS53Q5VIR6 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC20.86■□□□□ 0.93
VPS53Q5VIR6 AL020989.1-201ENST00000422979 469 ntBASIC20.86■□□□□ 0.93
VPS53Q5VIR6 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC20.86■□□□□ 0.93
VPS53Q5VIR6 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
VPS53Q5VIR6 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC20.86■□□□□ 0.93
VPS53Q5VIR6 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC20.86■□□□□ 0.93
VPS53Q5VIR6 AC021087.4-201ENST00000563761 564 ntBASIC20.86■□□□□ 0.93
VPS53Q5VIR6 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC20.86■□□□□ 0.93
VPS53Q5VIR6 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC20.86■□□□□ 0.93
VPS53Q5VIR6 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC20.86■□□□□ 0.93
VPS53Q5VIR6 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS53Q5VIR6 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS53Q5VIR6 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS53Q5VIR6 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC20.86■□□□□ 0.93
VPS53Q5VIR6 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
VPS53Q5VIR6 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS53Q5VIR6 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC20.86■□□□□ 0.93
VPS53Q5VIR6 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS53Q5VIR6 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS53Q5VIR6 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS53Q5VIR6 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC20.86■□□□□ 0.93
VPS53Q5VIR6 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC20.86■□□□□ 0.93
VPS53Q5VIR6 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
VPS53Q5VIR6 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
VPS53Q5VIR6 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC20.86■□□□□ 0.93
VPS53Q5VIR6 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
VPS53Q5VIR6 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VPS53Q5VIR6 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC20.85■□□□□ 0.93
VPS53Q5VIR6 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS53Q5VIR6 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS53Q5VIR6 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS53Q5VIR6 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS53Q5VIR6 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS53Q5VIR6 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS53Q5VIR6 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS53Q5VIR6 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS53Q5VIR6 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC20.85■□□□□ 0.93
VPS53Q5VIR6 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC20.85■□□□□ 0.93
VPS53Q5VIR6 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS53Q5VIR6 AC009078.2-202ENST00000463353 338 ntBASIC20.85■□□□□ 0.93
VPS53Q5VIR6 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC20.85■□□□□ 0.93
VPS53Q5VIR6 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VPS53Q5VIR6 COPE-211ENST00000600932 1144 ntTSL 5 BASIC20.85■□□□□ 0.93
VPS53Q5VIR6 AC025062.2-201ENST00000605477 670 ntBASIC20.85■□□□□ 0.93
VPS53Q5VIR6 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC20.85■□□□□ 0.93
VPS53Q5VIR6 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VPS53Q5VIR6 AL135999.2-201ENST00000622438 1686 ntBASIC20.85■□□□□ 0.93
VPS53Q5VIR6 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS53Q5VIR6 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS53Q5VIR6 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS53Q5VIR6 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VPS53Q5VIR6 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
VPS53Q5VIR6 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VPS53Q5VIR6 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VPS53Q5VIR6 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC20.85■□□□□ 0.93
VPS53Q5VIR6 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VPS53Q5VIR6 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS53Q5VIR6 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
VPS53Q5VIR6 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC20.84■□□□□ 0.93
VPS53Q5VIR6 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS53Q5VIR6 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
VPS53Q5VIR6 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS53Q5VIR6 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS53Q5VIR6 PCDHA12-202ENST00000613593 2588 ntBASIC20.84■□□□□ 0.93
VPS53Q5VIR6 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC20.84■□□□□ 0.93
VPS53Q5VIR6 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
VPS53Q5VIR6 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS53Q5VIR6 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS53Q5VIR6 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC20.84■□□□□ 0.93
VPS53Q5VIR6 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC20.84■□□□□ 0.93
VPS53Q5VIR6 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC20.84■□□□□ 0.93
VPS53Q5VIR6 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC20.84■□□□□ 0.93
VPS53Q5VIR6 AP002469.2-201ENST00000531724 424 ntBASIC20.84■□□□□ 0.93
VPS53Q5VIR6 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC20.84■□□□□ 0.93
VPS53Q5VIR6 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC20.84■□□□□ 0.93
VPS53Q5VIR6 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC20.84■□□□□ 0.93
VPS53Q5VIR6 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS53Q5VIR6 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS53Q5VIR6 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS53Q5VIR6 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC20.84■□□□□ 0.93
VPS53Q5VIR6 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
VPS53Q5VIR6 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS53Q5VIR6 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS53Q5VIR6 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS53Q5VIR6 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
VPS53Q5VIR6 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS53Q5VIR6 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS53Q5VIR6 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
VPS53Q5VIR6 AC009053.2-201ENST00000563701 2365 ntBASIC20.83■□□□□ 0.93
VPS53Q5VIR6 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
VPS53Q5VIR6 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC20.83■□□□□ 0.93
VPS53Q5VIR6 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC20.83■□□□□ 0.93
VPS53Q5VIR6 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
VPS53Q5VIR6 AC022211.2-201ENST00000585075 2527 ntBASIC20.83■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms