Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 LINC00628-201ENST00000628516 1289 ntBASIC16.61■□□□□ 0.25
COL28A1Q2UY09 AL513210.1-201ENST00000629608 234 ntBASIC16.61■□□□□ 0.25
COL28A1Q2UY09 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 AC004817.3-201ENST00000602957 2129 ntBASIC16.6■□□□□ 0.25
COL28A1Q2UY09 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 AC099398.1-201ENST00000567919 2776 ntBASIC16.6■□□□□ 0.25
COL28A1Q2UY09 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 NARF-204ENST00000390006 1766 ntTSL 2 BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 AC004461.1-201ENST00000412461 403 ntBASIC16.6■□□□□ 0.25
COL28A1Q2UY09 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 FLYWCH1P1-201ENST00000460917 1874 ntBASIC16.6■□□□□ 0.25
COL28A1Q2UY09 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL28A1Q2UY09 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL28A1Q2UY09 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL28A1Q2UY09 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL28A1Q2UY09 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL28A1Q2UY09 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL28A1Q2UY09 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
COL28A1Q2UY09 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL28A1Q2UY09 POR-209ENST00000439269 1858 ntTSL 2 BASIC16.59■□□□□ 0.25
COL28A1Q2UY09 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL28A1Q2UY09 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
COL28A1Q2UY09 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
COL28A1Q2UY09 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL28A1Q2UY09 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
COL28A1Q2UY09 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC16.59■□□□□ 0.25
COL28A1Q2UY09 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC16.59■□□□□ 0.25
COL28A1Q2UY09 NMU-203ENST00000507338 658 ntTSL 3 BASIC16.59■□□□□ 0.25
COL28A1Q2UY09 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC16.59■□□□□ 0.25
COL28A1Q2UY09 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC16.59■□□□□ 0.25
COL28A1Q2UY09 CD63-210ENST00000550776 870 ntTSL 5 BASIC16.59■□□□□ 0.25
COL28A1Q2UY09 DUX4L27-201ENST00000554796 1261 ntBASIC16.59■□□□□ 0.25
COL28A1Q2UY09 AC004877.2-201ENST00000623941 599 ntBASIC16.59■□□□□ 0.25
COL28A1Q2UY09 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL28A1Q2UY09 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC16.59■□□□□ 0.25
COL28A1Q2UY09 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL28A1Q2UY09 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL28A1Q2UY09 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC16.59■□□□□ 0.25
COL28A1Q2UY09 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL28A1Q2UY09 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL28A1Q2UY09 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
COL28A1Q2UY09 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL28A1Q2UY09 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.59■□□□□ 0.25
COL28A1Q2UY09 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL28A1Q2UY09 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL28A1Q2UY09 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL28A1Q2UY09 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL28A1Q2UY09 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL28A1Q2UY09 ABALON-201ENST00000629058 1903 ntBASIC16.58■□□□□ 0.25
COL28A1Q2UY09 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
COL28A1Q2UY09 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL28A1Q2UY09 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL28A1Q2UY09 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms