Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
ABCA4P78363 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
ABCA4P78363 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC14.82□□□□□ -0.04
ABCA4P78363 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
ABCA4P78363 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
ABCA4P78363 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
ABCA4P78363 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
ABCA4P78363 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
ABCA4P78363 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
ABCA4P78363 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC14.82□□□□□ -0.04
ABCA4P78363 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
ABCA4P78363 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC14.82□□□□□ -0.04
ABCA4P78363 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
ABCA4P78363 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
ABCA4P78363 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC14.82□□□□□ -0.04
ABCA4P78363 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
ABCA4P78363 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
ABCA4P78363 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC14.82□□□□□ -0.04
ABCA4P78363 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC14.82□□□□□ -0.04
ABCA4P78363 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC14.82□□□□□ -0.04
ABCA4P78363 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
ABCA4P78363 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC14.82□□□□□ -0.04
ABCA4P78363 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC14.82□□□□□ -0.04
ABCA4P78363 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
ABCA4P78363 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
ABCA4P78363 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
ABCA4P78363 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ABCA4P78363 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ABCA4P78363 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
ABCA4P78363 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ABCA4P78363 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
ABCA4P78363 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ABCA4P78363 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
ABCA4P78363 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ABCA4P78363 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
ABCA4P78363 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ABCA4P78363 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ABCA4P78363 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ABCA4P78363 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
ABCA4P78363 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
ABCA4P78363 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
ABCA4P78363 AC087163.2-201ENST00000457299 853 ntBASIC14.81□□□□□ -0.04
ABCA4P78363 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC14.81□□□□□ -0.04
ABCA4P78363 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
ABCA4P78363 AP001059.3-201ENST00000619053 235 ntBASIC14.81□□□□□ -0.04
ABCA4P78363 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ABCA4P78363 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC14.81□□□□□ -0.04
ABCA4P78363 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
ABCA4P78363 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC14.81□□□□□ -0.04
ABCA4P78363 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ABCA4P78363 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
ABCA4P78363 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
ABCA4P78363 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ABCA4P78363 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
ABCA4P78363 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC14.81□□□□□ -0.04
ABCA4P78363 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ABCA4P78363 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ABCA4P78363 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC14.81□□□□□ -0.04
ABCA4P78363 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
ABCA4P78363 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
ABCA4P78363 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC14.81□□□□□ -0.04
ABCA4P78363 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC14.81□□□□□ -0.04
ABCA4P78363 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ABCA4P78363 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
ABCA4P78363 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC14.81□□□□□ -0.04
ABCA4P78363 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC14.81□□□□□ -0.04
ABCA4P78363 AC015911.4-201ENST00000588022 1070 ntBASIC14.81□□□□□ -0.04
ABCA4P78363 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
ABCA4P78363 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC14.81□□□□□ -0.04
ABCA4P78363 LINC00628-201ENST00000628516 1289 ntBASIC14.81□□□□□ -0.04
ABCA4P78363 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC14.81□□□□□ -0.04
ABCA4P78363 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA4P78363 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC14.8□□□□□ -0.04
ABCA4P78363 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA4P78363 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA4P78363 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA4P78363 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC14.8□□□□□ -0.04
ABCA4P78363 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA4P78363 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA4P78363 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA4P78363 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA4P78363 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA4P78363 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC14.8□□□□□ -0.04
ABCA4P78363 TIMM8BP1-201ENST00000452384 211 ntBASIC14.8□□□□□ -0.04
ABCA4P78363 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC14.8□□□□□ -0.04
ABCA4P78363 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC14.8□□□□□ -0.04
ABCA4P78363 AC093520.2-201ENST00000561830 333 ntBASIC14.8□□□□□ -0.04
ABCA4P78363 TK1-204ENST00000590430 683 ntTSL 3 BASIC14.8□□□□□ -0.04
ABCA4P78363 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA4P78363 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC14.8□□□□□ -0.04
ABCA4P78363 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
ABCA4P78363 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA4P78363 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA4P78363 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA4P78363 STK24-203ENST00000397517 4578 ntTSL 2 BASIC14.8□□□□□ -0.04
ABCA4P78363 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA4P78363 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC14.8□□□□□ -0.04
ABCA4P78363 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
ABCA4P78363 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA4P78363 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms