Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 WDR88-203ENST00000592765 651 ntTSL 5 BASIC15.99■□□□□ 0.15
RNF4P78317 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
RNF4P78317 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
RNF4P78317 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
RNF4P78317 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
RNF4P78317 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
RNF4P78317 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC15.99■□□□□ 0.15
RNF4P78317 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
RNF4P78317 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
RNF4P78317 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
RNF4P78317 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
RNF4P78317 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
RNF4P78317 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC15.99■□□□□ 0.15
RNF4P78317 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
RNF4P78317 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC15.99■□□□□ 0.15
RNF4P78317 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
RNF4P78317 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC15.99■□□□□ 0.15
RNF4P78317 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC15.98■□□□□ 0.15
RNF4P78317 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
RNF4P78317 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC15.98■□□□□ 0.15
RNF4P78317 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC15.98■□□□□ 0.15
RNF4P78317 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
RNF4P78317 AL590787.1-201ENST00000568856 1315 ntBASIC15.98■□□□□ 0.15
RNF4P78317 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
RNF4P78317 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
RNF4P78317 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
RNF4P78317 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
RNF4P78317 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
RNF4P78317 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
RNF4P78317 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
RNF4P78317 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC15.98■□□□□ 0.15
RNF4P78317 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
RNF4P78317 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
RNF4P78317 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
RNF4P78317 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
RNF4P78317 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC15.98■□□□□ 0.15
RNF4P78317 RPL13AP23-201ENST00000480739 586 ntBASIC15.98■□□□□ 0.15
RNF4P78317 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC15.98■□□□□ 0.15
RNF4P78317 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC15.98■□□□□ 0.15
RNF4P78317 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
RNF4P78317 NME4-212ENST00000621774 904 ntTSL 3 BASIC15.98■□□□□ 0.15
RNF4P78317 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
RNF4P78317 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
RNF4P78317 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC15.98■□□□□ 0.15
RNF4P78317 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC15.98■□□□□ 0.15
RNF4P78317 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
RNF4P78317 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC15.98■□□□□ 0.15
RNF4P78317 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC15.98■□□□□ 0.15
RNF4P78317 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC15.98■□□□□ 0.15
RNF4P78317 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
RNF4P78317 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
RNF4P78317 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
RNF4P78317 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC15.97■□□□□ 0.15
RNF4P78317 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
RNF4P78317 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RNF4P78317 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RNF4P78317 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
RNF4P78317 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC15.97■□□□□ 0.15
RNF4P78317 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RNF4P78317 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RNF4P78317 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
RNF4P78317 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
RNF4P78317 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC15.97■□□□□ 0.15
RNF4P78317 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RNF4P78317 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RNF4P78317 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
RNF4P78317 PTCHD3P3-201ENST00000403073 906 ntBASIC15.97■□□□□ 0.15
RNF4P78317 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC15.97■□□□□ 0.15
RNF4P78317 NABP1-203ENST00000409510 843 ntTSL 5 BASIC15.97■□□□□ 0.15
RNF4P78317 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC15.97■□□□□ 0.15
RNF4P78317 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
RNF4P78317 RPS15P9-201ENST00000494093 319 ntBASIC15.97■□□□□ 0.15
RNF4P78317 RNA5SP415-201ENST00000517246 115 ntBASIC15.97■□□□□ 0.15
RNF4P78317 UNC93B6-202ENST00000528242 690 ntBASIC15.97■□□□□ 0.15
RNF4P78317 SLC25A1P1-201ENST00000528351 927 ntBASIC15.97■□□□□ 0.15
RNF4P78317 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
RNF4P78317 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RNF4P78317 RPL18-209ENST00000550645 463 ntTSL 5 BASIC15.97■□□□□ 0.15
RNF4P78317 RPL18-214ENST00000552588 559 ntTSL 3 BASIC15.97■□□□□ 0.15
RNF4P78317 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC15.97■□□□□ 0.15
RNF4P78317 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
RNF4P78317 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
RNF4P78317 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
RNF4P78317 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC15.97■□□□□ 0.15
RNF4P78317 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC15.97■□□□□ 0.15
RNF4P78317 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
RNF4P78317 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
RNF4P78317 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
RNF4P78317 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
RNF4P78317 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RNF4P78317 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC15.96■□□□□ 0.15
RNF4P78317 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC15.96■□□□□ 0.15
RNF4P78317 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
RNF4P78317 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
RNF4P78317 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
RNF4P78317 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
RNF4P78317 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
RNF4P78317 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
RNF4P78317 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RNF4P78317 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms