Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HDAC4P56524 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HDAC4P56524 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
HDAC4P56524 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HDAC4P56524 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HDAC4P56524 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
HDAC4P56524 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HDAC4P56524 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
HDAC4P56524 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
HDAC4P56524 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HDAC4P56524 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.05■□□□□ 0.48
HDAC4P56524 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HDAC4P56524 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HDAC4P56524 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HDAC4P56524 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HDAC4P56524 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HDAC4P56524 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HDAC4P56524 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HDAC4P56524 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HDAC4P56524 SAPCD2P3-201ENST00000455031 850 ntBASIC18.05■□□□□ 0.48
HDAC4P56524 BX005266.1-201ENST00000473402 457 ntBASIC18.05■□□□□ 0.48
HDAC4P56524 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC18.05■□□□□ 0.48
HDAC4P56524 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC18.05■□□□□ 0.48
HDAC4P56524 NKAPP1-205ENST00000585790 367 ntBASIC18.05■□□□□ 0.48
HDAC4P56524 AC008608.2-201ENST00000606089 416 ntBASIC18.05■□□□□ 0.48
HDAC4P56524 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
HDAC4P56524 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HDAC4P56524 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
HDAC4P56524 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HDAC4P56524 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HDAC4P56524 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HDAC4P56524 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
HDAC4P56524 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC18.05■□□□□ 0.48
HDAC4P56524 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
HDAC4P56524 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HDAC4P56524 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC18.05■□□□□ 0.48
HDAC4P56524 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HDAC4P56524 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
HDAC4P56524 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC18.04■□□□□ 0.48
HDAC4P56524 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC4P56524 PAN3-AS1-201ENST00000563843 1351 ntBASIC18.04■□□□□ 0.48
HDAC4P56524 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC18.04■□□□□ 0.48
HDAC4P56524 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC18.04■□□□□ 0.48
HDAC4P56524 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC4P56524 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC4P56524 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC4P56524 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
HDAC4P56524 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
HDAC4P56524 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
HDAC4P56524 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
HDAC4P56524 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC4P56524 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC18.04■□□□□ 0.48
HDAC4P56524 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC4P56524 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC4P56524 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC4P56524 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC4P56524 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC4P56524 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC4P56524 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC18.04■□□□□ 0.48
HDAC4P56524 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
HDAC4P56524 PRYP5-201ENST00000451909 266 ntBASIC18.04■□□□□ 0.48
HDAC4P56524 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC18.04■□□□□ 0.48
HDAC4P56524 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC18.04■□□□□ 0.48
HDAC4P56524 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC4P56524 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC4P56524 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC18.04■□□□□ 0.48
HDAC4P56524 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC4P56524 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC18.04■□□□□ 0.48
HDAC4P56524 AL139288.1-201ENST00000623748 933 ntBASIC18.04■□□□□ 0.48
HDAC4P56524 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC4P56524 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC4P56524 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC18.04■□□□□ 0.48
HDAC4P56524 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC4P56524 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC4P56524 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC18.04■□□□□ 0.48
HDAC4P56524 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC4P56524 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC4P56524 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
HDAC4P56524 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC18.04■□□□□ 0.48
HDAC4P56524 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
HDAC4P56524 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
HDAC4P56524 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HDAC4P56524 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HDAC4P56524 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
HDAC4P56524 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
HDAC4P56524 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC18.03■□□□□ 0.48
HDAC4P56524 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC18.03■□□□□ 0.48
HDAC4P56524 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC18.03■□□□□ 0.48
HDAC4P56524 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HDAC4P56524 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HDAC4P56524 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
HDAC4P56524 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
HDAC4P56524 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC18.03■□□□□ 0.48
HDAC4P56524 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC18.03■□□□□ 0.48
HDAC4P56524 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
HDAC4P56524 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HDAC4P56524 SART3-203ENST00000546611 1184 ntBASIC18.03■□□□□ 0.48
HDAC4P56524 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC18.03■□□□□ 0.48
HDAC4P56524 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC18.03■□□□□ 0.48
HDAC4P56524 LINC01711-201ENST00000598340 967 ntBASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms