Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
COL4A4P53420 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A4P53420 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.29■□□□□ 0.52
COL4A4P53420 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A4P53420 AMT-250ENST00000637682 1823 ntTSL 5 BASIC18.29■□□□□ 0.52
COL4A4P53420 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC18.29■□□□□ 0.52
COL4A4P53420 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A4P53420 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
COL4A4P53420 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A4P53420 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
COL4A4P53420 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A4P53420 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC18.29■□□□□ 0.52
COL4A4P53420 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A4P53420 FAM86C2P-203ENST00000528684 1004 ntBASIC18.29■□□□□ 0.52
COL4A4P53420 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A4P53420 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC18.29■□□□□ 0.52
COL4A4P53420 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
COL4A4P53420 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
COL4A4P53420 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A4P53420 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A4P53420 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A4P53420 AKAP8P1-201ENST00000434743 1349 ntBASIC18.29■□□□□ 0.52
COL4A4P53420 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A4P53420 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
COL4A4P53420 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A4P53420 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A4P53420 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A4P53420 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A4P53420 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
COL4A4P53420 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC18.28■□□□□ 0.52
COL4A4P53420 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.28■□□□□ 0.52
COL4A4P53420 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC18.28■□□□□ 0.52
COL4A4P53420 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC18.28■□□□□ 0.52
COL4A4P53420 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A4P53420 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A4P53420 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A4P53420 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A4P53420 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
COL4A4P53420 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC18.28■□□□□ 0.52
COL4A4P53420 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A4P53420 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC18.28■□□□□ 0.52
COL4A4P53420 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A4P53420 LYSMD4-203ENST00000378904 2122 ntBASIC18.28■□□□□ 0.52
COL4A4P53420 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
COL4A4P53420 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.28■□□□□ 0.52
COL4A4P53420 ENSA-206ENST00000361631 725 ntTSL 2 BASIC18.28■□□□□ 0.52
COL4A4P53420 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A4P53420 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC18.28■□□□□ 0.52
COL4A4P53420 RAB34-224ENST00000636513 888 ntTSL 5 BASIC18.28■□□□□ 0.52
COL4A4P53420 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A4P53420 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC18.28■□□□□ 0.52
COL4A4P53420 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC18.28■□□□□ 0.52
COL4A4P53420 AC129492.6-201ENST00000611383 1305 ntBASIC18.28■□□□□ 0.52
COL4A4P53420 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL4A4P53420 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL4A4P53420 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL4A4P53420 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
COL4A4P53420 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
COL4A4P53420 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
COL4A4P53420 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL4A4P53420 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL4A4P53420 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL4A4P53420 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL4A4P53420 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL4A4P53420 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.27■□□□□ 0.52
COL4A4P53420 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL4A4P53420 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL4A4P53420 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL4A4P53420 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC18.27■□□□□ 0.52
COL4A4P53420 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL4A4P53420 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC18.27■□□□□ 0.52
COL4A4P53420 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC18.27■□□□□ 0.52
COL4A4P53420 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC18.27■□□□□ 0.52
COL4A4P53420 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL4A4P53420 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC18.27■□□□□ 0.52
COL4A4P53420 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
COL4A4P53420 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
COL4A4P53420 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
COL4A4P53420 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC18.27■□□□□ 0.51
COL4A4P53420 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.27■□□□□ 0.51
COL4A4P53420 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
COL4A4P53420 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.27■□□□□ 0.51
COL4A4P53420 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
COL4A4P53420 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
COL4A4P53420 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
COL4A4P53420 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL4A4P53420 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC18.26■□□□□ 0.51
COL4A4P53420 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
COL4A4P53420 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC18.26■□□□□ 0.51
COL4A4P53420 AC026150.2-201ENST00000564693 1156 ntBASIC18.26■□□□□ 0.51
COL4A4P53420 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL4A4P53420 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
COL4A4P53420 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.26■□□□□ 0.51
COL4A4P53420 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
COL4A4P53420 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
COL4A4P53420 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL4A4P53420 AC067852.2-201ENST00000590513 2313 ntBASIC18.26■□□□□ 0.51
COL4A4P53420 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL4A4P53420 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.26■□□□□ 0.51
COL4A4P53420 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms