Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NUP98P52948 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NUP98P52948 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
NUP98P52948 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NUP98P52948 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC21.26■□□□□ 0.99
NUP98P52948 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC21.25■□□□□ 0.99
NUP98P52948 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC21.25■□□□□ 0.99
NUP98P52948 AC092474.2-201ENST00000424288 719 ntBASIC21.25■□□□□ 0.99
NUP98P52948 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NUP98P52948 CNN2P2-201ENST00000443536 909 ntBASIC21.25■□□□□ 0.99
NUP98P52948 CNN2P3-201ENST00000450201 906 ntBASIC21.25■□□□□ 0.99
NUP98P52948 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC21.25■□□□□ 0.99
NUP98P52948 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
NUP98P52948 GATD1-206ENST00000526325 756 ntTSL 5 BASIC21.25■□□□□ 0.99
NUP98P52948 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC21.25■□□□□ 0.99
NUP98P52948 LINC01225-203ENST00000563550 1244 ntBASIC21.25■□□□□ 0.99
NUP98P52948 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC21.25■□□□□ 0.99
NUP98P52948 AC138761.1-201ENST00000584393 385 ntBASIC21.25■□□□□ 0.99
NUP98P52948 MIR6080-201ENST00000617359 66 ntBASIC21.25■□□□□ 0.99
NUP98P52948 AL136317.3-201ENST00000618497 906 ntBASIC21.25■□□□□ 0.99
NUP98P52948 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC21.25■□□□□ 0.99
NUP98P52948 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NUP98P52948 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
NUP98P52948 AL390961.4-201ENST00000623958 2535 ntBASIC21.25■□□□□ 0.99
NUP98P52948 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC21.25■□□□□ 0.99
NUP98P52948 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC21.25■□□□□ 0.99
NUP98P52948 NOC2LP1-202ENST00000452600 2235 ntBASIC21.25■□□□□ 0.99
NUP98P52948 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NUP98P52948 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NUP98P52948 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
NUP98P52948 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC21.25■□□□□ 0.99
NUP98P52948 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC21.25■□□□□ 0.99
NUP98P52948 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NUP98P52948 HNRNPFP1-201ENST00000391730 1133 ntBASIC21.25■□□□□ 0.99
NUP98P52948 AC107890.1-201ENST00000422478 521 ntBASIC21.25■□□□□ 0.99
NUP98P52948 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC21.25■□□□□ 0.99
NUP98P52948 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
NUP98P52948 AC087641.1-201ENST00000557561 1021 ntBASIC21.25■□□□□ 0.99
NUP98P52948 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC21.25■□□□□ 0.99
NUP98P52948 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC21.25■□□□□ 0.99
NUP98P52948 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NUP98P52948 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NUP98P52948 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NUP98P52948 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC21.25■□□□□ 0.99
NUP98P52948 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
NUP98P52948 BOC-212ENST00000485230 2173 ntTSL 2 BASIC21.24■□□□□ 0.99
NUP98P52948 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC21.24■□□□□ 0.99
NUP98P52948 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
NUP98P52948 STX3-203ENST00000529177 1571 ntTSL 2 BASIC21.24■□□□□ 0.99
NUP98P52948 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NUP98P52948 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC21.24■□□□□ 0.99
NUP98P52948 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
NUP98P52948 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
NUP98P52948 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
NUP98P52948 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
NUP98P52948 SPCS2P4-201ENST00000436160 681 ntBASIC21.24■□□□□ 0.99
NUP98P52948 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NUP98P52948 AL512356.2-201ENST00000546955 174 ntBASIC21.24■□□□□ 0.99
NUP98P52948 AC026150.2-201ENST00000564693 1156 ntBASIC21.24■□□□□ 0.99
NUP98P52948 NAA60-208ENST00000570819 833 ntTSL 2 BASIC21.24■□□□□ 0.99
NUP98P52948 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC21.24■□□□□ 0.99
NUP98P52948 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC21.24■□□□□ 0.99
NUP98P52948 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NUP98P52948 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
NUP98P52948 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
NUP98P52948 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NUP98P52948 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
NUP98P52948 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC21.23■□□□□ 0.99
NUP98P52948 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
NUP98P52948 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NUP98P52948 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
NUP98P52948 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC21.23■□□□□ 0.99
NUP98P52948 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC21.23■□□□□ 0.99
NUP98P52948 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC21.23■□□□□ 0.99
NUP98P52948 AC069120.2-201ENST00000524091 540 ntBASIC21.23■□□□□ 0.99
NUP98P52948 ALG1L8P-201ENST00000533887 760 ntBASIC21.23■□□□□ 0.99
NUP98P52948 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC21.23■□□□□ 0.99
NUP98P52948 AC027307.2-201ENST00000591252 911 ntBASIC21.23■□□□□ 0.99
NUP98P52948 LINC00896-202ENST00000609602 2128 ntBASIC21.23■□□□□ 0.99
NUP98P52948 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC21.23■□□□□ 0.99
NUP98P52948 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
NUP98P52948 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC21.23■□□□□ 0.99
NUP98P52948 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
NUP98P52948 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
NUP98P52948 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
NUP98P52948 GNE-204ENST00000539208 2190 ntTSL 2 BASIC21.23■□□□□ 0.99
NUP98P52948 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
NUP98P52948 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NUP98P52948 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
NUP98P52948 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NUP98P52948 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NUP98P52948 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC21.22■□□□□ 0.99
NUP98P52948 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC21.22■□□□□ 0.99
NUP98P52948 TREML5P-201ENST00000421694 576 ntBASIC21.22■□□□□ 0.99
NUP98P52948 AC055876.3-201ENST00000431496 288 ntBASIC21.22■□□□□ 0.99
NUP98P52948 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC21.22■□□□□ 0.99
NUP98P52948 UGT1A2P-201ENST00000454886 866 ntBASIC21.22■□□□□ 0.99
NUP98P52948 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC21.22■□□□□ 0.99
NUP98P52948 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC21.22■□□□□ 0.99
NUP98P52948 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms