Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CTCFP49711 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CTCFP49711 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CTCFP49711 CD74-212ENST00000524315 584 ntTSL 5 BASIC19.89■□□□□ 0.77
CTCFP49711 AC141586.3-201ENST00000562166 1838 ntBASIC19.89■□□□□ 0.77
CTCFP49711 RN7SL190P-201ENST00000582519 257 ntBASIC19.89■□□□□ 0.77
CTCFP49711 COX11-210ENST00000639671 696 ntBASIC19.89■□□□□ 0.77
CTCFP49711 AL645728.2-201ENST00000641974 660 ntBASIC19.89■□□□□ 0.77
CTCFP49711 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CTCFP49711 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
CTCFP49711 AL049812.1-201ENST00000432563 2267 ntBASIC19.88■□□□□ 0.77
CTCFP49711 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC19.88■□□□□ 0.77
CTCFP49711 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CTCFP49711 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CTCFP49711 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC19.88■□□□□ 0.77
CTCFP49711 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC19.88■□□□□ 0.77
CTCFP49711 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CTCFP49711 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CTCFP49711 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
CTCFP49711 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CTCFP49711 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CTCFP49711 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CTCFP49711 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CTCFP49711 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CTCFP49711 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC19.88■□□□□ 0.77
CTCFP49711 TPI1-206ENST00000488464 791 ntTSL 5 BASIC19.88■□□□□ 0.77
CTCFP49711 LY6E-204ENST00000519546 971 ntTSL 2 BASIC19.88■□□□□ 0.77
CTCFP49711 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC19.88■□□□□ 0.77
CTCFP49711 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC19.88■□□□□ 0.77
CTCFP49711 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC19.88■□□□□ 0.77
CTCFP49711 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
CTCFP49711 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC19.88■□□□□ 0.77
CTCFP49711 AL512343.1-201ENST00000605837 169 ntBASIC19.88■□□□□ 0.77
CTCFP49711 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
CTCFP49711 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC19.88■□□□□ 0.77
CTCFP49711 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CTCFP49711 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CTCFP49711 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CTCFP49711 WAC-202ENST00000347934 2839 ntTSL 5 BASIC19.88■□□□□ 0.77
CTCFP49711 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC19.88■□□□□ 0.77
CTCFP49711 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CTCFP49711 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CTCFP49711 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.87■□□□□ 0.77
CTCFP49711 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CTCFP49711 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC19.87■□□□□ 0.77
CTCFP49711 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC19.87■□□□□ 0.77
CTCFP49711 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC19.87■□□□□ 0.77
CTCFP49711 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC19.87■□□□□ 0.77
CTCFP49711 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CTCFP49711 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.87■□□□□ 0.77
CTCFP49711 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CTCFP49711 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CTCFP49711 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CTCFP49711 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
CTCFP49711 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC19.87■□□□□ 0.77
CTCFP49711 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CTCFP49711 ACTBP11-201ENST00000436287 1126 ntBASIC19.87■□□□□ 0.77
CTCFP49711 KRT223P-202ENST00000449164 1292 ntBASIC19.87■□□□□ 0.77
CTCFP49711 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CTCFP49711 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC19.87■□□□□ 0.77
CTCFP49711 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC19.87■□□□□ 0.77
CTCFP49711 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC19.87■□□□□ 0.77
CTCFP49711 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC19.87■□□□□ 0.77
CTCFP49711 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CTCFP49711 IGHV3OR16-16-201ENST00000563644 343 ntBASIC19.87■□□□□ 0.77
CTCFP49711 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CTCFP49711 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC19.87■□□□□ 0.77
CTCFP49711 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC19.87■□□□□ 0.77
CTCFP49711 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CTCFP49711 AC133552.6-201ENST00000613406 534 ntBASIC19.87■□□□□ 0.77
CTCFP49711 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC19.87■□□□□ 0.77
CTCFP49711 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CTCFP49711 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CTCFP49711 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
CTCFP49711 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
CTCFP49711 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CTCFP49711 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC19.86■□□□□ 0.77
CTCFP49711 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CTCFP49711 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC19.86■□□□□ 0.77
CTCFP49711 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CTCFP49711 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CTCFP49711 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CTCFP49711 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CTCFP49711 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CTCFP49711 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
CTCFP49711 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
CTCFP49711 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC19.86■□□□□ 0.77
CTCFP49711 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
CTCFP49711 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CTCFP49711 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CTCFP49711 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CTCFP49711 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC19.86■□□□□ 0.77
CTCFP49711 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC19.86■□□□□ 0.77
CTCFP49711 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC19.86■□□□□ 0.77
CTCFP49711 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC19.86■□□□□ 0.77
CTCFP49711 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CTCFP49711 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC19.86■□□□□ 0.77
CTCFP49711 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC19.86■□□□□ 0.77
CTCFP49711 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CTCFP49711 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms