Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RFX3P48380 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RFX3P48380 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC16.28■□□□□ 0.2
RFX3P48380 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
RFX3P48380 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.27■□□□□ 0.2
RFX3P48380 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RFX3P48380 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RFX3P48380 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RFX3P48380 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RFX3P48380 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
RFX3P48380 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RFX3P48380 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC16.27■□□□□ 0.2
RFX3P48380 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RFX3P48380 THAP5-204ENST00000438865 868 ntTSL 2 BASIC16.27■□□□□ 0.2
RFX3P48380 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RFX3P48380 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.27■□□□□ 0.2
RFX3P48380 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.27■□□□□ 0.2
RFX3P48380 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RFX3P48380 IGHV3-52-201ENST00000519770 353 ntBASIC16.27■□□□□ 0.2
RFX3P48380 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC16.27■□□□□ 0.2
RFX3P48380 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.27■□□□□ 0.2
RFX3P48380 AC012615.1-201ENST00000565797 1299 ntBASIC16.27■□□□□ 0.2
RFX3P48380 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.27■□□□□ 0.2
RFX3P48380 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC16.27■□□□□ 0.2
RFX3P48380 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC16.27■□□□□ 0.2
RFX3P48380 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC16.27■□□□□ 0.2
RFX3P48380 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC16.27■□□□□ 0.2
RFX3P48380 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC16.27■□□□□ 0.2
RFX3P48380 HARS-201ENST00000307633 1780 ntTSL 2 BASIC16.27■□□□□ 0.2
RFX3P48380 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC16.27■□□□□ 0.2
RFX3P48380 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC16.27■□□□□ 0.2
RFX3P48380 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
RFX3P48380 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
RFX3P48380 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
RFX3P48380 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC16.27■□□□□ 0.19
RFX3P48380 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
RFX3P48380 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
RFX3P48380 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
RFX3P48380 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.27■□□□□ 0.19
RFX3P48380 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
RFX3P48380 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.27■□□□□ 0.19
RFX3P48380 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
RFX3P48380 LYSMD4-203ENST00000378904 2122 ntBASIC16.27■□□□□ 0.19
RFX3P48380 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC16.27■□□□□ 0.19
RFX3P48380 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.19
RFX3P48380 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RFX3P48380 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RFX3P48380 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
RFX3P48380 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RFX3P48380 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.26■□□□□ 0.19
RFX3P48380 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.26■□□□□ 0.19
RFX3P48380 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RFX3P48380 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RFX3P48380 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
RFX3P48380 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
RFX3P48380 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RFX3P48380 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
RFX3P48380 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.26■□□□□ 0.19
RFX3P48380 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
RFX3P48380 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
RFX3P48380 IGHV3-47-201ENST00000425060 335 ntBASIC16.26■□□□□ 0.19
RFX3P48380 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC16.26■□□□□ 0.19
RFX3P48380 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.26■□□□□ 0.19
RFX3P48380 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RFX3P48380 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
RFX3P48380 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC16.26■□□□□ 0.19
RFX3P48380 BNIP3P18-201ENST00000593976 575 ntBASIC16.26■□□□□ 0.19
RFX3P48380 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC16.26■□□□□ 0.19
RFX3P48380 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RFX3P48380 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RFX3P48380 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC16.26■□□□□ 0.19
RFX3P48380 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RFX3P48380 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
RFX3P48380 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
RFX3P48380 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RFX3P48380 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RFX3P48380 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
RFX3P48380 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.26■□□□□ 0.19
RFX3P48380 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
RFX3P48380 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RFX3P48380 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RFX3P48380 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.26■□□□□ 0.19
RFX3P48380 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
RFX3P48380 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
RFX3P48380 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
RFX3P48380 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RFX3P48380 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
RFX3P48380 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
RFX3P48380 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RFX3P48380 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RFX3P48380 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
RFX3P48380 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RFX3P48380 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.25■□□□□ 0.19
RFX3P48380 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
RFX3P48380 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
RFX3P48380 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
RFX3P48380 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RFX3P48380 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
RFX3P48380 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.25■□□□□ 0.19
RFX3P48380 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms