Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CXCL12P48061 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.05■□□□□ 0.32
CXCL12P48061 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CXCL12P48061 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CXCL12P48061 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.05■□□□□ 0.32
CXCL12P48061 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CXCL12P48061 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC17.05■□□□□ 0.32
CXCL12P48061 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC17.05■□□□□ 0.32
CXCL12P48061 NME2P1-201ENST00000426182 414 ntBASIC17.05■□□□□ 0.32
CXCL12P48061 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC17.05■□□□□ 0.32
CXCL12P48061 AC004890.2-204ENST00000481968 304 ntBASIC17.05■□□□□ 0.32
CXCL12P48061 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC17.05■□□□□ 0.32
CXCL12P48061 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC17.05■□□□□ 0.32
CXCL12P48061 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC17.05■□□□□ 0.32
CXCL12P48061 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC17.05■□□□□ 0.32
CXCL12P48061 AP000842.3-202ENST00000569238 1080 ntBASIC17.05■□□□□ 0.32
CXCL12P48061 MIR4453-201ENST00000584019 89 ntBASIC17.05■□□□□ 0.32
CXCL12P48061 AC027307.2-201ENST00000591252 911 ntBASIC17.05■□□□□ 0.32
CXCL12P48061 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CXCL12P48061 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CXCL12P48061 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CXCL12P48061 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CXCL12P48061 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CXCL12P48061 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC17.04■□□□□ 0.32
CXCL12P48061 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.04■□□□□ 0.32
CXCL12P48061 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.04■□□□□ 0.32
CXCL12P48061 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.04■□□□□ 0.32
CXCL12P48061 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
CXCL12P48061 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CXCL12P48061 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
CXCL12P48061 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.04■□□□□ 0.32
CXCL12P48061 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.04■□□□□ 0.32
CXCL12P48061 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CXCL12P48061 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
CXCL12P48061 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.04■□□□□ 0.32
CXCL12P48061 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CXCL12P48061 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
CXCL12P48061 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
CXCL12P48061 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC17.04■□□□□ 0.32
CXCL12P48061 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CXCL12P48061 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC17.04■□□□□ 0.32
CXCL12P48061 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CXCL12P48061 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CXCL12P48061 MEIS3P1-201ENST00000495167 958 ntBASIC17.04■□□□□ 0.32
CXCL12P48061 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.04■□□□□ 0.32
CXCL12P48061 AC027369.6-201ENST00000525520 931 ntBASIC17.04■□□□□ 0.32
CXCL12P48061 AL596325.1-201ENST00000563991 1082 ntBASIC17.04■□□□□ 0.32
CXCL12P48061 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC17.04■□□□□ 0.32
CXCL12P48061 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC17.04■□□□□ 0.32
CXCL12P48061 SPDYE22P-201ENST00000582158 798 ntBASIC17.04■□□□□ 0.32
CXCL12P48061 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
CXCL12P48061 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC17.04■□□□□ 0.32
CXCL12P48061 COQ4-205ENST00000609948 956 ntTSL 2 BASIC17.04■□□□□ 0.32
CXCL12P48061 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
CXCL12P48061 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.04■□□□□ 0.32
CXCL12P48061 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CXCL12P48061 FLJ13224-201ENST00000313737 1514 ntBASIC17.04■□□□□ 0.32
CXCL12P48061 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CXCL12P48061 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CXCL12P48061 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CXCL12P48061 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.04■□□□□ 0.32
CXCL12P48061 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC17.04■□□□□ 0.32
CXCL12P48061 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CXCL12P48061 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC17.04■□□□□ 0.32
CXCL12P48061 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CXCL12P48061 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC17.04■□□□□ 0.32
CXCL12P48061 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CXCL12P48061 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC17.04■□□□□ 0.32
CXCL12P48061 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CXCL12P48061 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CXCL12P48061 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CXCL12P48061 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CXCL12P48061 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CXCL12P48061 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC17.03■□□□□ 0.32
CXCL12P48061 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CXCL12P48061 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CXCL12P48061 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CXCL12P48061 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CXCL12P48061 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CXCL12P48061 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CXCL12P48061 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.03■□□□□ 0.32
CXCL12P48061 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
CXCL12P48061 MIR346-201ENST00000362234 95 ntBASIC17.03■□□□□ 0.32
CXCL12P48061 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CXCL12P48061 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC17.03■□□□□ 0.32
CXCL12P48061 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC17.03■□□□□ 0.32
CXCL12P48061 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC17.03■□□□□ 0.32
CXCL12P48061 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC17.03■□□□□ 0.32
CXCL12P48061 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CXCL12P48061 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CXCL12P48061 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC17.03■□□□□ 0.32
CXCL12P48061 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
CXCL12P48061 LINC01451-201ENST00000623792 534 ntBASIC17.03■□□□□ 0.32
CXCL12P48061 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
CXCL12P48061 AL353732.1-201ENST00000569618 1459 ntBASIC17.03■□□□□ 0.32
CXCL12P48061 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CXCL12P48061 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CXCL12P48061 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CXCL12P48061 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CXCL12P48061 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms