Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HNF4AP41235 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HNF4AP41235 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
HNF4AP41235 KLF4P1-201ENST00000412782 1185 ntBASIC16.77■□□□□ 0.28
HNF4AP41235 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC16.77■□□□□ 0.28
HNF4AP41235 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC16.77■□□□□ 0.28
HNF4AP41235 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.77■□□□□ 0.28
HNF4AP41235 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.77■□□□□ 0.28
HNF4AP41235 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC16.77■□□□□ 0.28
HNF4AP41235 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC16.77■□□□□ 0.28
HNF4AP41235 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC16.77■□□□□ 0.28
HNF4AP41235 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HNF4AP41235 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.28
HNF4AP41235 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HNF4AP41235 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
HNF4AP41235 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.77■□□□□ 0.27
HNF4AP41235 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.77■□□□□ 0.27
HNF4AP41235 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.77■□□□□ 0.27
HNF4AP41235 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HNF4AP41235 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HNF4AP41235 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HNF4AP41235 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HNF4AP41235 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
HNF4AP41235 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
HNF4AP41235 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC16.77■□□□□ 0.27
HNF4AP41235 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
HNF4AP41235 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC16.76■□□□□ 0.27
HNF4AP41235 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HNF4AP41235 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
HNF4AP41235 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HNF4AP41235 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.76■□□□□ 0.27
HNF4AP41235 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
HNF4AP41235 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
HNF4AP41235 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HNF4AP41235 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HNF4AP41235 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
HNF4AP41235 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
HNF4AP41235 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HNF4AP41235 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HNF4AP41235 PCDHA12-202ENST00000613593 2588 ntBASIC16.76■□□□□ 0.27
HNF4AP41235 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
HNF4AP41235 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HNF4AP41235 AC132938.5-201ENST00000624980 1813 ntBASIC16.76■□□□□ 0.27
HNF4AP41235 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HNF4AP41235 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HNF4AP41235 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HNF4AP41235 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.76■□□□□ 0.27
HNF4AP41235 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC16.76■□□□□ 0.27
HNF4AP41235 KRT16P4-201ENST00000453883 522 ntBASIC16.76■□□□□ 0.27
HNF4AP41235 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.76■□□□□ 0.27
HNF4AP41235 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.76■□□□□ 0.27
HNF4AP41235 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.76■□□□□ 0.27
HNF4AP41235 AC091304.2-201ENST00000564639 760 ntBASIC16.76■□□□□ 0.27
HNF4AP41235 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HNF4AP41235 AL121772.3-201ENST00000610840 674 ntBASIC16.76■□□□□ 0.27
HNF4AP41235 AC073592.5-201ENST00000624854 528 ntBASIC16.76■□□□□ 0.27
HNF4AP41235 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC16.76■□□□□ 0.27
HNF4AP41235 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HNF4AP41235 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
HNF4AP41235 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HNF4AP41235 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HNF4AP41235 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
HNF4AP41235 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16.76■□□□□ 0.27
HNF4AP41235 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HNF4AP41235 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.76■□□□□ 0.27
HNF4AP41235 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.76■□□□□ 0.27
HNF4AP41235 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HNF4AP41235 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.76■□□□□ 0.27
HNF4AP41235 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HNF4AP41235 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
HNF4AP41235 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HNF4AP41235 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HNF4AP41235 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HNF4AP41235 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.75■□□□□ 0.27
HNF4AP41235 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.75■□□□□ 0.27
HNF4AP41235 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.75■□□□□ 0.27
HNF4AP41235 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.75■□□□□ 0.27
HNF4AP41235 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HNF4AP41235 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HNF4AP41235 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HNF4AP41235 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
HNF4AP41235 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HNF4AP41235 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC16.75■□□□□ 0.27
HNF4AP41235 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
HNF4AP41235 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HNF4AP41235 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HNF4AP41235 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
HNF4AP41235 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.75■□□□□ 0.27
HNF4AP41235 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
HNF4AP41235 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
HNF4AP41235 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.75■□□□□ 0.27
HNF4AP41235 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HNF4AP41235 SLC25A1P3-201ENST00000395415 828 ntBASIC16.75■□□□□ 0.27
HNF4AP41235 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC16.75■□□□□ 0.27
HNF4AP41235 AC132008.2-207ENST00000454517 770 ntBASIC16.75■□□□□ 0.27
HNF4AP41235 KRT18P31-201ENST00000506277 1292 ntBASIC16.75■□□□□ 0.27
HNF4AP41235 LINC02012-201ENST00000608206 1725 ntBASIC16.75■□□□□ 0.27
HNF4AP41235 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
HNF4AP41235 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
HNF4AP41235 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms