Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A1P12109 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A1P12109 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
COL6A1P12109 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC18.91■□□□□ 0.62
COL6A1P12109 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A1P12109 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A1P12109 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.91■□□□□ 0.62
COL6A1P12109 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.91■□□□□ 0.62
COL6A1P12109 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A1P12109 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC18.9■□□□□ 0.62
COL6A1P12109 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A1P12109 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
COL6A1P12109 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A1P12109 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A1P12109 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
COL6A1P12109 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
COL6A1P12109 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC18.9■□□□□ 0.62
COL6A1P12109 KRT17P7-201ENST00000451704 1104 ntBASIC18.9■□□□□ 0.62
COL6A1P12109 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC18.9■□□□□ 0.62
COL6A1P12109 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
COL6A1P12109 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC18.9■□□□□ 0.62
COL6A1P12109 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A1P12109 AC073592.8-201ENST00000624126 511 ntBASIC18.9■□□□□ 0.62
COL6A1P12109 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
COL6A1P12109 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A1P12109 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A1P12109 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.9■□□□□ 0.62
COL6A1P12109 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A1P12109 AC022144.1-201ENST00000602255 1580 ntBASIC18.89■□□□□ 0.62
COL6A1P12109 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
COL6A1P12109 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.89■□□□□ 0.62
COL6A1P12109 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A1P12109 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.89■□□□□ 0.61
COL6A1P12109 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.89■□□□□ 0.61
COL6A1P12109 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.89■□□□□ 0.61
COL6A1P12109 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC18.89■□□□□ 0.61
COL6A1P12109 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
COL6A1P12109 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A1P12109 AC027369.6-201ENST00000525520 931 ntBASIC18.89■□□□□ 0.61
COL6A1P12109 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.89■□□□□ 0.61
COL6A1P12109 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC18.89■□□□□ 0.61
COL6A1P12109 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC18.89■□□□□ 0.61
COL6A1P12109 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC18.89■□□□□ 0.61
COL6A1P12109 AC004233.3-201ENST00000607794 1269 ntBASIC18.89■□□□□ 0.61
COL6A1P12109 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC18.89■□□□□ 0.61
COL6A1P12109 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
COL6A1P12109 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
COL6A1P12109 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A1P12109 AC120498.9-201ENST00000339021 3867 ntBASIC18.89■□□□□ 0.61
COL6A1P12109 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A1P12109 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.89■□□□□ 0.61
COL6A1P12109 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A1P12109 WASH6P-202ENST00000359512 1437 ntBASIC18.89■□□□□ 0.61
COL6A1P12109 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A1P12109 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.89■□□□□ 0.61
COL6A1P12109 FLJ13224-201ENST00000313737 1514 ntBASIC18.89■□□□□ 0.61
COL6A1P12109 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A1P12109 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A1P12109 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A1P12109 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A1P12109 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.88■□□□□ 0.61
COL6A1P12109 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A1P12109 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC18.88■□□□□ 0.61
COL6A1P12109 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A1P12109 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.88■□□□□ 0.61
COL6A1P12109 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.88■□□□□ 0.61
COL6A1P12109 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
COL6A1P12109 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
COL6A1P12109 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A1P12109 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A1P12109 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
COL6A1P12109 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
COL6A1P12109 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A1P12109 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A1P12109 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC18.88■□□□□ 0.61
COL6A1P12109 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A1P12109 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
COL6A1P12109 AC005412.3-201ENST00000580309 715 ntBASIC18.88■□□□□ 0.61
COL6A1P12109 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A1P12109 MIR6799-201ENST00000620297 69 ntBASIC18.88■□□□□ 0.61
COL6A1P12109 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC18.88■□□□□ 0.61
COL6A1P12109 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A1P12109 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A1P12109 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A1P12109 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC18.88■□□□□ 0.61
COL6A1P12109 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.88■□□□□ 0.61
COL6A1P12109 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.88■□□□□ 0.61
COL6A1P12109 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC18.88■□□□□ 0.61
COL6A1P12109 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A1P12109 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
COL6A1P12109 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A1P12109 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.87■□□□□ 0.61
COL6A1P12109 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A1P12109 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A1P12109 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A1P12109 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
COL6A1P12109 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A1P12109 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A1P12109 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A1P12109 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms