Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
HOXD4P09016 IGHV3-52-201ENST00000519770 353 ntBASIC15.7■□□□□ 0.1
HOXD4P09016 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HOXD4P09016 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC15.7■□□□□ 0.1
HOXD4P09016 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXD4P09016 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
HOXD4P09016 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXD4P09016 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXD4P09016 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXD4P09016 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC15.7■□□□□ 0.1
HOXD4P09016 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC15.7■□□□□ 0.1
HOXD4P09016 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXD4P09016 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXD4P09016 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC15.7■□□□□ 0.1
HOXD4P09016 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
HOXD4P09016 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXD4P09016 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC15.7■□□□□ 0.1
HOXD4P09016 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXD4P09016 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXD4P09016 AL049757.1-201ENST00000616842 1596 ntBASIC15.7■□□□□ 0.1
HOXD4P09016 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
HOXD4P09016 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
HOXD4P09016 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXD4P09016 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXD4P09016 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC15.69■□□□□ 0.1
HOXD4P09016 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXD4P09016 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXD4P09016 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC15.69■□□□□ 0.1
HOXD4P09016 AL645608.8-201ENST00000606034 2086 ntBASIC15.69■□□□□ 0.1
HOXD4P09016 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC15.69■□□□□ 0.1
HOXD4P09016 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HOXD4P09016 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC15.69■□□□□ 0.1
HOXD4P09016 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HOXD4P09016 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HOXD4P09016 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXD4P09016 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC15.69■□□□□ 0.1
HOXD4P09016 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
HOXD4P09016 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC15.69■□□□□ 0.1
HOXD4P09016 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HOXD4P09016 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXD4P09016 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC15.69■□□□□ 0.1
HOXD4P09016 MYCLP1-201ENST00000372451 1075 ntBASIC15.69■□□□□ 0.1
HOXD4P09016 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC15.69■□□□□ 0.1
HOXD4P09016 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC15.69■□□□□ 0.1
HOXD4P09016 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
HOXD4P09016 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC15.69■□□□□ 0.1
HOXD4P09016 AC136632.2-201ENST00000512891 861 ntBASIC15.69■□□□□ 0.1
HOXD4P09016 UNC93B6-202ENST00000528242 690 ntBASIC15.69■□□□□ 0.1
HOXD4P09016 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC15.69■□□□□ 0.1
HOXD4P09016 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
HOXD4P09016 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC15.69■□□□□ 0.1
HOXD4P09016 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC15.69■□□□□ 0.1
HOXD4P09016 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC15.69■□□□□ 0.1
HOXD4P09016 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXD4P09016 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC15.69■□□□□ 0.1
HOXD4P09016 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
HOXD4P09016 AC093677.2-201ENST00000600169 1863 ntBASIC15.69■□□□□ 0.1
HOXD4P09016 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXD4P09016 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
HOXD4P09016 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC15.69■□□□□ 0.1
HOXD4P09016 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HOXD4P09016 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC15.68■□□□□ 0.1
HOXD4P09016 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC15.68■□□□□ 0.1
HOXD4P09016 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
HOXD4P09016 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HOXD4P09016 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HOXD4P09016 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
HOXD4P09016 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXD4P09016 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
HOXD4P09016 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC15.68■□□□□ 0.1
HOXD4P09016 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
HOXD4P09016 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
HOXD4P09016 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXD4P09016 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC15.68■□□□□ 0.1
HOXD4P09016 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXD4P09016 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC15.68■□□□□ 0.1
HOXD4P09016 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXD4P09016 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC15.68■□□□□ 0.1
HOXD4P09016 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXD4P09016 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HOXD4P09016 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HOXD4P09016 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXD4P09016 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC15.68■□□□□ 0.1
HOXD4P09016 IMP4-203ENST00000409935 958 ntTSL 5 BASIC15.68■□□□□ 0.1
HOXD4P09016 KLF4P1-201ENST00000412782 1185 ntBASIC15.68■□□□□ 0.1
HOXD4P09016 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC15.68■□□□□ 0.1
HOXD4P09016 KRT18P3-201ENST00000451602 1288 ntBASIC15.68■□□□□ 0.1
HOXD4P09016 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC15.68■□□□□ 0.1
HOXD4P09016 RNA5SP416-201ENST00000516838 111 ntBASIC15.68■□□□□ 0.1
HOXD4P09016 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC15.68■□□□□ 0.1
HOXD4P09016 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
HOXD4P09016 COPE-211ENST00000600932 1144 ntTSL 5 BASIC15.68■□□□□ 0.1
HOXD4P09016 AC055717.3-201ENST00000622967 595 ntBASIC15.68■□□□□ 0.1
HOXD4P09016 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
HOXD4P09016 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC15.68■□□□□ 0.1
HOXD4P09016 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXD4P09016 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC15.68■□□□□ 0.1
HOXD4P09016 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXD4P09016 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXD4P09016 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 83.1 ms