Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 IRX5-204ENST00000560154 879 ntTSL 5 BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 AC009065.1-201ENST00000564055 1225 ntBASIC13.04□□□□□ -0.32
HLA-DQA1P01909 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 AC004264.1-201ENST00000608354 794 ntBASIC13.04□□□□□ -0.32
HLA-DQA1P01909 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 CASK-202ENST00000378158 3848 ntTSL 5 BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DQA1P01909 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC13.02□□□□□ -0.32
HLA-DQA1P01909 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
HLA-DQA1P01909 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.32
HLA-DQA1P01909 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC13.02□□□□□ -0.32
HLA-DQA1P01909 AC132938.6-201ENST00000623828 1655 ntBASIC13.02□□□□□ -0.32
HLA-DQA1P01909 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
HLA-DQA1P01909 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
HLA-DQA1P01909 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC13.02□□□□□ -0.32
HLA-DQA1P01909 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
HLA-DQA1P01909 AC009949.1-201ENST00000623048 1830 ntBASIC13.02□□□□□ -0.32
HLA-DQA1P01909 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC13.02□□□□□ -0.32
HLA-DQA1P01909 AL024508.2-201ENST00000607749 1894 ntBASIC13.02□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms