Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
SDC3O75056 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
SDC3O75056 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC16.86■□□□□ 0.29
SDC3O75056 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
SDC3O75056 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SDC3O75056 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SDC3O75056 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
SDC3O75056 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
SDC3O75056 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.85■□□□□ 0.29
SDC3O75056 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SDC3O75056 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SDC3O75056 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SDC3O75056 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC16.85■□□□□ 0.29
SDC3O75056 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SDC3O75056 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SDC3O75056 ENSA-206ENST00000361631 725 ntTSL 2 BASIC16.85■□□□□ 0.29
SDC3O75056 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
SDC3O75056 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SDC3O75056 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.85■□□□□ 0.29
SDC3O75056 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
SDC3O75056 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SDC3O75056 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC16.85■□□□□ 0.29
SDC3O75056 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SDC3O75056 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SDC3O75056 MED16-214ENST00000617672 554 ntTSL 5 BASIC16.85■□□□□ 0.29
SDC3O75056 CITED2-204ENST00000618718 901 ntTSL 2 BASIC16.85■□□□□ 0.29
SDC3O75056 ORC5-208ENST00000626700 344 ntTSL 3 BASIC16.85■□□□□ 0.29
SDC3O75056 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SDC3O75056 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC16.85■□□□□ 0.29
SDC3O75056 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC16.85■□□□□ 0.29
SDC3O75056 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
SDC3O75056 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.85■□□□□ 0.29
SDC3O75056 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
SDC3O75056 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
SDC3O75056 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
SDC3O75056 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC16.85■□□□□ 0.29
SDC3O75056 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC16.85■□□□□ 0.29
SDC3O75056 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.85■□□□□ 0.29
SDC3O75056 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC16.85■□□□□ 0.29
SDC3O75056 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC16.85■□□□□ 0.29
SDC3O75056 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SDC3O75056 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SDC3O75056 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SDC3O75056 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
SDC3O75056 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SDC3O75056 AC006116.8-202ENST00000587620 1550 ntBASIC16.85■□□□□ 0.29
SDC3O75056 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SDC3O75056 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC16.84■□□□□ 0.29
SDC3O75056 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SDC3O75056 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
SDC3O75056 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.84■□□□□ 0.29
SDC3O75056 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
SDC3O75056 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
SDC3O75056 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SDC3O75056 DDT-204ENST00000404092 805 ntTSL 3 BASIC16.84■□□□□ 0.29
SDC3O75056 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
SDC3O75056 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC16.84■□□□□ 0.29
SDC3O75056 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC16.84■□□□□ 0.29
SDC3O75056 ACTG1P14-201ENST00000446382 1122 ntBASIC16.84■□□□□ 0.29
SDC3O75056 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SDC3O75056 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC16.84■□□□□ 0.29
SDC3O75056 AP000344.2-201ENST00000512987 629 ntBASIC16.84■□□□□ 0.29
SDC3O75056 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC16.84■□□□□ 0.29
SDC3O75056 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SDC3O75056 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC16.84■□□□□ 0.29
SDC3O75056 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SDC3O75056 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
SDC3O75056 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SDC3O75056 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SDC3O75056 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC16.84■□□□□ 0.29
SDC3O75056 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
SDC3O75056 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
SDC3O75056 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC16.84■□□□□ 0.29
SDC3O75056 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.84■□□□□ 0.29
SDC3O75056 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SDC3O75056 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SDC3O75056 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SDC3O75056 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SDC3O75056 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
SDC3O75056 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.84■□□□□ 0.29
SDC3O75056 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SDC3O75056 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
SDC3O75056 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
SDC3O75056 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SDC3O75056 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
SDC3O75056 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
SDC3O75056 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
SDC3O75056 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
SDC3O75056 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SDC3O75056 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SDC3O75056 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SDC3O75056 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SDC3O75056 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SDC3O75056 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SDC3O75056 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SDC3O75056 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SDC3O75056 STOM-202ENST00000347359 870 ntTSL 2 BASIC16.83■□□□□ 0.28
SDC3O75056 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
SDC3O75056 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
SDC3O75056 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms