Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC005915.1-201ENST00000624912 2018 ntBASIC15.22■□□□□ 0.03
LMX1BO60663 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
LMX1BO60663 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC15.22■□□□□ 0.03
LMX1BO60663 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1BO60663 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
LMX1BO60663 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1BO60663 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1BO60663 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1BO60663 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1BO60663 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC15.22■□□□□ 0.03
LMX1BO60663 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1BO60663 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC15.22■□□□□ 0.03
LMX1BO60663 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1BO60663 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1BO60663 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LMX1BO60663 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LMX1BO60663 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC15.21■□□□□ 0.03
LMX1BO60663 PC-208ENST00000529047 1607 ntTSL 3 BASIC15.21■□□□□ 0.03
LMX1BO60663 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
LMX1BO60663 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LMX1BO60663 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
LMX1BO60663 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC15.21■□□□□ 0.03
LMX1BO60663 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
LMX1BO60663 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LMX1BO60663 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LMX1BO60663 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LMX1BO60663 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LMX1BO60663 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LMX1BO60663 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
LMX1BO60663 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LMX1BO60663 SLC25A1P3-201ENST00000395415 828 ntBASIC15.21■□□□□ 0.03
LMX1BO60663 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC15.21■□□□□ 0.03
LMX1BO60663 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LMX1BO60663 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC15.21■□□□□ 0.03
LMX1BO60663 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC15.21■□□□□ 0.03
LMX1BO60663 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC15.21■□□□□ 0.03
LMX1BO60663 TK1-204ENST00000590430 683 ntTSL 3 BASIC15.21■□□□□ 0.03
LMX1BO60663 AC064862.7-201ENST00000604520 867 ntBASIC15.21■□□□□ 0.03
LMX1BO60663 AC120114.3-201ENST00000611923 658 ntBASIC15.21■□□□□ 0.03
LMX1BO60663 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
LMX1BO60663 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC15.21■□□□□ 0.03
LMX1BO60663 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
LMX1BO60663 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LMX1BO60663 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LMX1BO60663 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
LMX1BO60663 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
LMX1BO60663 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
LMX1BO60663 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.02
LMX1BO60663 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
LMX1BO60663 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC15.21■□□□□ 0.02
LMX1BO60663 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
LMX1BO60663 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
LMX1BO60663 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1BO60663 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
LMX1BO60663 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1BO60663 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1BO60663 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1BO60663 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC15.2■□□□□ 0.02
LMX1BO60663 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1BO60663 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC15.2■□□□□ 0.02
LMX1BO60663 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1BO60663 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1BO60663 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1BO60663 FLJ38576-201ENST00000623820 2459 ntBASIC15.2■□□□□ 0.02
LMX1BO60663 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC15.2■□□□□ 0.02
LMX1BO60663 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
LMX1BO60663 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1BO60663 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
LMX1BO60663 AL118508.1-201ENST00000613502 2345 ntBASIC15.2■□□□□ 0.02
LMX1BO60663 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1BO60663 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1BO60663 AC092053.1-201ENST00000605787 1936 ntBASIC15.2■□□□□ 0.02
LMX1BO60663 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1BO60663 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1BO60663 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
LMX1BO60663 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
LMX1BO60663 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1BO60663 MRPL3P1-201ENST00000400109 1033 ntBASIC15.2■□□□□ 0.02
LMX1BO60663 AC096633.1-201ENST00000422446 749 ntBASIC15.2■□□□□ 0.02
LMX1BO60663 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1BO60663 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1BO60663 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC15.2■□□□□ 0.02
LMX1BO60663 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC15.2■□□□□ 0.02
LMX1BO60663 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC15.2■□□□□ 0.02
LMX1BO60663 AC124864.1-201ENST00000623408 392 ntBASIC15.2■□□□□ 0.02
LMX1BO60663 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC15.2■□□□□ 0.02
LMX1BO60663 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1BO60663 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC15.2■□□□□ 0.02
LMX1BO60663 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC15.2■□□□□ 0.02
LMX1BO60663 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
LMX1BO60663 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
LMX1BO60663 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1BO60663 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1BO60663 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1BO60663 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
LMX1BO60663 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1BO60663 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1BO60663 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1BO60663 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1BO60663 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms