Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HOXC11O43248 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HOXC11O43248 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HOXC11O43248 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
HOXC11O43248 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.5■□□□□ 0.39
HOXC11O43248 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HOXC11O43248 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HOXC11O43248 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HOXC11O43248 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HOXC11O43248 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HOXC11O43248 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HOXC11O43248 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HOXC11O43248 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HOXC11O43248 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
HOXC11O43248 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HOXC11O43248 STOM-202ENST00000347359 870 ntTSL 2 BASIC17.5■□□□□ 0.39
HOXC11O43248 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HOXC11O43248 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC17.5■□□□□ 0.39
HOXC11O43248 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC17.5■□□□□ 0.39
HOXC11O43248 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HOXC11O43248 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC17.5■□□□□ 0.39
HOXC11O43248 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC17.5■□□□□ 0.39
HOXC11O43248 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
HOXC11O43248 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC17.5■□□□□ 0.39
HOXC11O43248 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
HOXC11O43248 AL513210.1-201ENST00000629608 234 ntBASIC17.5■□□□□ 0.39
HOXC11O43248 AL645728.2-201ENST00000641974 660 ntBASIC17.5■□□□□ 0.39
HOXC11O43248 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
HOXC11O43248 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.5■□□□□ 0.39
HOXC11O43248 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC17.5■□□□□ 0.39
HOXC11O43248 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC17.5■□□□□ 0.39
HOXC11O43248 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HOXC11O43248 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HOXC11O43248 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.5■□□□□ 0.39
HOXC11O43248 AC092919.2-201ENST00000623631 1645 ntBASIC17.5■□□□□ 0.39
HOXC11O43248 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HOXC11O43248 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HOXC11O43248 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
HOXC11O43248 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HOXC11O43248 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXC11O43248 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
HOXC11O43248 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HOXC11O43248 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
HOXC11O43248 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXC11O43248 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXC11O43248 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.49■□□□□ 0.39
HOXC11O43248 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXC11O43248 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
HOXC11O43248 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC17.49■□□□□ 0.39
HOXC11O43248 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXC11O43248 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.49■□□□□ 0.39
HOXC11O43248 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC17.49■□□□□ 0.39
HOXC11O43248 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HOXC11O43248 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC17.49■□□□□ 0.39
HOXC11O43248 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HOXC11O43248 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXC11O43248 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC17.49■□□□□ 0.39
HOXC11O43248 NMU-203ENST00000507338 658 ntTSL 3 BASIC17.49■□□□□ 0.39
HOXC11O43248 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC17.49■□□□□ 0.39
HOXC11O43248 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC17.49■□□□□ 0.39
HOXC11O43248 AC112191.1-201ENST00000523689 701 ntBASIC17.49■□□□□ 0.39
HOXC11O43248 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.49■□□□□ 0.39
HOXC11O43248 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HOXC11O43248 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
HOXC11O43248 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC17.49■□□□□ 0.39
HOXC11O43248 METTL23-205ENST00000588302 925 ntTSL 5 BASIC17.49■□□□□ 0.39
HOXC11O43248 AL355385.1-201ENST00000606123 409 ntBASIC17.49■□□□□ 0.39
HOXC11O43248 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC17.49■□□□□ 0.39
HOXC11O43248 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC17.49■□□□□ 0.39
HOXC11O43248 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC17.49■□□□□ 0.39
HOXC11O43248 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.49■□□□□ 0.39
HOXC11O43248 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXC11O43248 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXC11O43248 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXC11O43248 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC17.49■□□□□ 0.39
HOXC11O43248 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
HOXC11O43248 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC17.48■□□□□ 0.39
HOXC11O43248 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HOXC11O43248 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HOXC11O43248 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HOXC11O43248 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HOXC11O43248 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HOXC11O43248 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
HOXC11O43248 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.48■□□□□ 0.39
HOXC11O43248 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HOXC11O43248 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HOXC11O43248 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HOXC11O43248 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC17.48■□□□□ 0.39
HOXC11O43248 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
HOXC11O43248 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC17.48■□□□□ 0.39
HOXC11O43248 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
HOXC11O43248 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
HOXC11O43248 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC17.48■□□□□ 0.39
HOXC11O43248 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
HOXC11O43248 AC027612.4-201ENST00000605371 583 ntBASIC17.48■□□□□ 0.39
HOXC11O43248 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
HOXC11O43248 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HOXC11O43248 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC17.48■□□□□ 0.39
HOXC11O43248 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC17.48■□□□□ 0.39
HOXC11O43248 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms