Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
MSH4O15457 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
MSH4O15457 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC19.34■□□□□ 0.69
MSH4O15457 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
MSH4O15457 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
MSH4O15457 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC19.33■□□□□ 0.69
MSH4O15457 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
MSH4O15457 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
MSH4O15457 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
MSH4O15457 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
MSH4O15457 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
MSH4O15457 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
MSH4O15457 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
MSH4O15457 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
MSH4O15457 MRPL20P1-201ENST00000400819 433 ntBASIC19.33■□□□□ 0.68
MSH4O15457 MIR940-201ENST00000401276 94 ntBASIC19.33■□□□□ 0.68
MSH4O15457 PMS2P1-201ENST00000431037 1228 ntBASIC19.33■□□□□ 0.68
MSH4O15457 VN2R19P-201ENST00000442399 1052 ntBASIC19.33■□□□□ 0.68
MSH4O15457 AC087163.2-201ENST00000457299 853 ntBASIC19.33■□□□□ 0.68
MSH4O15457 POLD2P1-201ENST00000511220 997 ntBASIC19.33■□□□□ 0.68
MSH4O15457 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC19.33■□□□□ 0.68
MSH4O15457 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
MSH4O15457 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
MSH4O15457 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
MSH4O15457 LINC02012-201ENST00000608206 1725 ntBASIC19.33■□□□□ 0.68
MSH4O15457 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
MSH4O15457 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
MSH4O15457 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
MSH4O15457 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
MSH4O15457 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
MSH4O15457 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
MSH4O15457 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
MSH4O15457 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
MSH4O15457 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC19.32■□□□□ 0.68
MSH4O15457 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MSH4O15457 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MSH4O15457 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MSH4O15457 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC19.32■□□□□ 0.68
MSH4O15457 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MSH4O15457 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
MSH4O15457 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
MSH4O15457 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MSH4O15457 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MSH4O15457 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MSH4O15457 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
MSH4O15457 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC19.32■□□□□ 0.68
MSH4O15457 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC19.32■□□□□ 0.68
MSH4O15457 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC19.32■□□□□ 0.68
MSH4O15457 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC19.32■□□□□ 0.68
MSH4O15457 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
MSH4O15457 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
MSH4O15457 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MSH4O15457 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
MSH4O15457 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC19.32■□□□□ 0.68
MSH4O15457 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MSH4O15457 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MSH4O15457 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MSH4O15457 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
MSH4O15457 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
MSH4O15457 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
MSH4O15457 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MSH4O15457 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC19.32■□□□□ 0.68
MSH4O15457 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MSH4O15457 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC19.32■□□□□ 0.68
MSH4O15457 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC19.31■□□□□ 0.68
MSH4O15457 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
MSH4O15457 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MSH4O15457 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC19.31■□□□□ 0.68
MSH4O15457 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC19.31■□□□□ 0.68
MSH4O15457 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC19.31■□□□□ 0.68
MSH4O15457 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MSH4O15457 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
MSH4O15457 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC19.31■□□□□ 0.68
MSH4O15457 METTL26-205ENST00000397666 726 ntTSL 2 BASIC19.31■□□□□ 0.68
MSH4O15457 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC19.31■□□□□ 0.68
MSH4O15457 CRYGEP-201ENST00000412192 528 ntBASIC19.31■□□□□ 0.68
MSH4O15457 IGLL3P-201ENST00000412472 434 ntBASIC19.31■□□□□ 0.68
MSH4O15457 MED15P5-201ENST00000423150 992 ntBASIC19.31■□□□□ 0.68
MSH4O15457 KRT18P2-201ENST00000447938 1258 ntBASIC19.31■□□□□ 0.68
MSH4O15457 HCG4B-203ENST00000450128 991 ntBASIC19.31■□□□□ 0.68
MSH4O15457 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC19.31■□□□□ 0.68
MSH4O15457 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC19.31■□□□□ 0.68
MSH4O15457 AC064836.3-201ENST00000607928 673 ntBASIC19.31■□□□□ 0.68
MSH4O15457 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
MSH4O15457 AC010654.1-201ENST00000615722 808 ntBASIC19.31■□□□□ 0.68
MSH4O15457 FAM197Y3-203ENST00000618346 717 ntBASIC19.31■□□□□ 0.68
MSH4O15457 CAND2-206ENST00000626378 333 ntTSL 5 BASIC19.31■□□□□ 0.68
MSH4O15457 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MSH4O15457 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MSH4O15457 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
MSH4O15457 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MSH4O15457 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
MSH4O15457 AC092053.1-201ENST00000605787 1936 ntBASIC19.31■□□□□ 0.68
MSH4O15457 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
MSH4O15457 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC19.31■□□□□ 0.68
MSH4O15457 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MSH4O15457 FRMD8P1-201ENST00000440433 1524 ntBASIC19.3■□□□□ 0.68
MSH4O15457 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MSH4O15457 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MSH4O15457 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms