Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
PCDHA3Q9Y5H8 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PCDHA3Q9Y5H8 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PCDHA3Q9Y5H8 AP005901.3-202ENST00000581653 237 ntBASIC18.07■□□□□ 0.48
PCDHA3Q9Y5H8 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
PCDHA3Q9Y5H8 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
PCDHA3Q9Y5H8 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PCDHA3Q9Y5H8 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PCDHA3Q9Y5H8 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PCDHA3Q9Y5H8 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
PCDHA3Q9Y5H8 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
PCDHA3Q9Y5H8 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
PCDHA3Q9Y5H8 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC18.07■□□□□ 0.48
PCDHA3Q9Y5H8 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PCDHA3Q9Y5H8 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
PCDHA3Q9Y5H8 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PCDHA3Q9Y5H8 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
PCDHA3Q9Y5H8 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PCDHA3Q9Y5H8 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 AC016734.2-201ENST00000624325 1377 ntBASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 FXN-203ENST00000396366 922 ntTSL 2 BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 BX276092.5-203ENST00000456199 560 ntBASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 PTK2-216ENST00000519881 863 ntTSL 3 BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 AL121672.3-201ENST00000608644 468 ntBASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 AL121956.5-201ENST00000625261 221 ntBASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHA3Q9Y5H8 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 VENTXP7-201ENST00000475503 772 ntBASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 ABR-204ENST00000543210 1049 ntTSL 2 BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 ABR-217ENST00000572441 563 ntTSL 4 BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 NTF6B-201ENST00000591913 560 ntBASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 AL603756.1-201ENST00000606511 2163 ntBASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 GPR89P-201ENST00000407924 1495 ntBASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 PCDH8P1-201ENST00000428983 2773 ntBASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHA3Q9Y5H8 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms