Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CTDP1Q9Y5B0 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
CTDP1Q9Y5B0 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
CTDP1Q9Y5B0 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
CTDP1Q9Y5B0 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC19.96■□□□□ 0.79
CTDP1Q9Y5B0 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CTDP1Q9Y5B0 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
CTDP1Q9Y5B0 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC19.95■□□□□ 0.78
CTDP1Q9Y5B0 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTDP1Q9Y5B0 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CTDP1Q9Y5B0 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTDP1Q9Y5B0 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTDP1Q9Y5B0 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
CTDP1Q9Y5B0 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTDP1Q9Y5B0 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTDP1Q9Y5B0 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
CTDP1Q9Y5B0 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CTDP1Q9Y5B0 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
CTDP1Q9Y5B0 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC19.95■□□□□ 0.78
CTDP1Q9Y5B0 SMN2-210ENST00000511812 867 ntTSL 2 BASIC19.95■□□□□ 0.78
CTDP1Q9Y5B0 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CTDP1Q9Y5B0 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC19.95■□□□□ 0.78
CTDP1Q9Y5B0 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC19.95■□□□□ 0.78
CTDP1Q9Y5B0 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
CTDP1Q9Y5B0 AL513190.1-201ENST00000621254 727 ntBASIC19.95■□□□□ 0.78
CTDP1Q9Y5B0 AC004877.2-201ENST00000623941 599 ntBASIC19.95■□□□□ 0.78
CTDP1Q9Y5B0 AC007064.4-201ENST00000637740 555 ntBASIC19.95■□□□□ 0.78
CTDP1Q9Y5B0 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
CTDP1Q9Y5B0 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTDP1Q9Y5B0 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CTDP1Q9Y5B0 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTDP1Q9Y5B0 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC19.95■□□□□ 0.78
CTDP1Q9Y5B0 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC19.95■□□□□ 0.78
CTDP1Q9Y5B0 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTDP1Q9Y5B0 BICD1-207ENST00000551848 1962 ntBASIC19.95■□□□□ 0.78
CTDP1Q9Y5B0 AL590787.1-201ENST00000568856 1315 ntBASIC19.95■□□□□ 0.78
CTDP1Q9Y5B0 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
CTDP1Q9Y5B0 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
CTDP1Q9Y5B0 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTDP1Q9Y5B0 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC19.94■□□□□ 0.78
CTDP1Q9Y5B0 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC19.94■□□□□ 0.78
CTDP1Q9Y5B0 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC19.94■□□□□ 0.78
CTDP1Q9Y5B0 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CTDP1Q9Y5B0 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CTDP1Q9Y5B0 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CTDP1Q9Y5B0 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.94■□□□□ 0.78
CTDP1Q9Y5B0 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
CTDP1Q9Y5B0 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
CTDP1Q9Y5B0 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC19.94■□□□□ 0.78
CTDP1Q9Y5B0 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CTDP1Q9Y5B0 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC19.94■□□□□ 0.78
CTDP1Q9Y5B0 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC19.94■□□□□ 0.78
CTDP1Q9Y5B0 AC096734.2-201ENST00000562054 433 ntBASIC19.94■□□□□ 0.78
CTDP1Q9Y5B0 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC19.94■□□□□ 0.78
CTDP1Q9Y5B0 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CTDP1Q9Y5B0 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CTDP1Q9Y5B0 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
CTDP1Q9Y5B0 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CTDP1Q9Y5B0 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
CTDP1Q9Y5B0 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CTDP1Q9Y5B0 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CTDP1Q9Y5B0 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CTDP1Q9Y5B0 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 SNHG9-202ENST00000564014 471 ntBASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 AL596442.2-201ENST00000610240 980 ntBASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 AC010507.1-201ENST00000633895 436 ntBASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CTDP1Q9Y5B0 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms