Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
CLCF1Q9UBD9 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
CLCF1Q9UBD9 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLCF1Q9UBD9 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLCF1Q9UBD9 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLCF1Q9UBD9 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC15.37■□□□□ 0.05
CLCF1Q9UBD9 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLCF1Q9UBD9 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
CLCF1Q9UBD9 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CLCF1Q9UBD9 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CLCF1Q9UBD9 ATP6V0CP3-201ENST00000417255 467 ntBASIC15.37■□□□□ 0.05
CLCF1Q9UBD9 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC15.37■□□□□ 0.05
CLCF1Q9UBD9 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CLCF1Q9UBD9 KRT18P2-201ENST00000447938 1258 ntBASIC15.37■□□□□ 0.05
CLCF1Q9UBD9 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC15.37■□□□□ 0.05
CLCF1Q9UBD9 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CLCF1Q9UBD9 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC15.37■□□□□ 0.05
CLCF1Q9UBD9 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC15.37■□□□□ 0.05
CLCF1Q9UBD9 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CLCF1Q9UBD9 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC15.37■□□□□ 0.05
CLCF1Q9UBD9 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC15.37■□□□□ 0.05
CLCF1Q9UBD9 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CLCF1Q9UBD9 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
CLCF1Q9UBD9 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLCF1Q9UBD9 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLCF1Q9UBD9 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
CLCF1Q9UBD9 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC15.37■□□□□ 0.05
CLCF1Q9UBD9 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 GATB-213ENST00000515812 1893 ntTSL 5 BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 IGLL3P-201ENST00000412472 434 ntBASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 AC004832.2-201ENST00000426397 482 ntBASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 AC002347.1-201ENST00000569543 541 ntBASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 AC139530.3-201ENST00000620344 690 ntBASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 PI4KAP1-204ENST00000612579 1703 ntBASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLCF1Q9UBD9 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
CLCF1Q9UBD9 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC15.35■□□□□ 0.05
CLCF1Q9UBD9 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
CLCF1Q9UBD9 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC15.35■□□□□ 0.05
CLCF1Q9UBD9 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
CLCF1Q9UBD9 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
CLCF1Q9UBD9 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CLCF1Q9UBD9 LETM1P2-201ENST00000597330 2178 ntBASIC15.35■□□□□ 0.05
CLCF1Q9UBD9 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
CLCF1Q9UBD9 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CLCF1Q9UBD9 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC15.35■□□□□ 0.05
CLCF1Q9UBD9 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CLCF1Q9UBD9 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CLCF1Q9UBD9 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC15.35■□□□□ 0.05
CLCF1Q9UBD9 YBX2P1-201ENST00000394192 760 ntBASIC15.35■□□□□ 0.05
CLCF1Q9UBD9 PMP22-202ENST00000395936 816 ntTSL 3 BASIC15.35■□□□□ 0.05
CLCF1Q9UBD9 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC15.35■□□□□ 0.05
CLCF1Q9UBD9 MIR1233-2-201ENST00000408138 82 ntBASIC15.35■□□□□ 0.05
CLCF1Q9UBD9 MIR1233-1-201ENST00000408722 82 ntBASIC15.35■□□□□ 0.05
CLCF1Q9UBD9 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CLCF1Q9UBD9 OR7E47P-204ENST00000575924 449 ntBASIC15.35■□□□□ 0.05
CLCF1Q9UBD9 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC15.35■□□□□ 0.05
CLCF1Q9UBD9 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CLCF1Q9UBD9 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CLCF1Q9UBD9 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC15.35■□□□□ 0.05
CLCF1Q9UBD9 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC15.35■□□□□ 0.05
CLCF1Q9UBD9 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC15.35■□□□□ 0.05
CLCF1Q9UBD9 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms