Protein–RNA interactions for Protein: Q9BYV2

TRIM54, Tripartite motif-containing protein 54, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54Q9BYV2 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM54Q9BYV2 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM54Q9BYV2 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC17.12■□□□□ 0.33
TRIM54Q9BYV2 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.12■□□□□ 0.33
TRIM54Q9BYV2 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
TRIM54Q9BYV2 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC17.12■□□□□ 0.33
TRIM54Q9BYV2 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM54Q9BYV2 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM54Q9BYV2 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM54Q9BYV2 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM54Q9BYV2 AC091607.1-201ENST00000490318 1060 ntBASIC17.12■□□□□ 0.33
TRIM54Q9BYV2 COX5A-202ENST00000562233 441 ntTSL 3 BASIC17.12■□□□□ 0.33
TRIM54Q9BYV2 COX5A-204ENST00000567270 579 ntTSL 3 BASIC17.12■□□□□ 0.33
TRIM54Q9BYV2 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC17.12■□□□□ 0.33
TRIM54Q9BYV2 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC17.12■□□□□ 0.33
TRIM54Q9BYV2 AC019129.2-201ENST00000609837 1235 ntBASIC17.12■□□□□ 0.33
TRIM54Q9BYV2 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
TRIM54Q9BYV2 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM54Q9BYV2 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM54Q9BYV2 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM54Q9BYV2 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
TRIM54Q9BYV2 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM54Q9BYV2 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
TRIM54Q9BYV2 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM54Q9BYV2 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
TRIM54Q9BYV2 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.12■□□□□ 0.33
TRIM54Q9BYV2 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM54Q9BYV2 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM54Q9BYV2 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 NSUN5P1-202ENST00000421140 1535 ntBASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 NSUN5P2-203ENST00000457352 1529 ntBASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 CTNS-203ENST00000399306 803 ntTSL 3 BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 POM121L3P-201ENST00000419331 1163 ntBASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 AP000867.3-201ENST00000524675 377 ntBASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 AC074051.2-201ENST00000565115 352 ntBASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 AP005901.3-202ENST00000581653 237 ntBASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 AC092329.2-201ENST00000598402 547 ntBASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
TRIM54Q9BYV2 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
TRIM54Q9BYV2 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM54Q9BYV2 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
TRIM54Q9BYV2 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM54Q9BYV2 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.1■□□□□ 0.33
TRIM54Q9BYV2 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM54Q9BYV2 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM54Q9BYV2 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM54Q9BYV2 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.1■□□□□ 0.33
TRIM54Q9BYV2 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC17.1■□□□□ 0.33
TRIM54Q9BYV2 ATP5G2P1-201ENST00000433580 426 ntBASIC17.1■□□□□ 0.33
TRIM54Q9BYV2 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM54Q9BYV2 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC17.1■□□□□ 0.33
TRIM54Q9BYV2 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC17.1■□□□□ 0.33
TRIM54Q9BYV2 MPI-205ENST00000562606 1052 ntTSL 3 BASIC17.1■□□□□ 0.33
TRIM54Q9BYV2 AC012615.1-201ENST00000565797 1299 ntBASIC17.1■□□□□ 0.33
TRIM54Q9BYV2 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC17.1■□□□□ 0.33
TRIM54Q9BYV2 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
TRIM54Q9BYV2 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
TRIM54Q9BYV2 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM54Q9BYV2 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM54Q9BYV2 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM54Q9BYV2 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.1■□□□□ 0.33
TRIM54Q9BYV2 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM54Q9BYV2 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.1■□□□□ 0.33
TRIM54Q9BYV2 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM54Q9BYV2 AL049757.1-201ENST00000616842 1596 ntBASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms