Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
TRAIPQ9BWF2 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC18.95■□□□□ 0.62
TRAIPQ9BWF2 COX5A-206ENST00000568783 571 ntTSL 3 BASIC18.95■□□□□ 0.62
TRAIPQ9BWF2 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC18.95■□□□□ 0.62
TRAIPQ9BWF2 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC18.95■□□□□ 0.62
TRAIPQ9BWF2 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC18.95■□□□□ 0.62
TRAIPQ9BWF2 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRAIPQ9BWF2 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
TRAIPQ9BWF2 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TRAIPQ9BWF2 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
TRAIPQ9BWF2 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRAIPQ9BWF2 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRAIPQ9BWF2 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRAIPQ9BWF2 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRAIPQ9BWF2 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC18.95■□□□□ 0.62
TRAIPQ9BWF2 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC18.95■□□□□ 0.62
TRAIPQ9BWF2 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRAIPQ9BWF2 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 AC097637.2-201ENST00000624096 1997 ntBASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 AP002414.1-201ENST00000391405 1147 ntBASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 ACTG1P4-201ENST00000425123 1122 ntBASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 FIS1-203ENST00000442303 631 ntTSL 3 BASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 VN2R19P-201ENST00000442399 1052 ntBASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 KRT18P2-201ENST00000447938 1258 ntBASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 HCG4B-203ENST00000450128 991 ntBASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 RIN3-211ENST00000557762 517 ntTSL 3 BASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRAIPQ9BWF2 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 CRYGEP-201ENST00000412192 528 ntBASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 LINC00982-205ENST00000420957 435 ntBASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 MCCD1P2-201ENST00000423228 335 ntBASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 MTDHP5-201ENST00000598980 586 ntBASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
TRAIPQ9BWF2 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
TRAIPQ9BWF2 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC18.92■□□□□ 0.62
TRAIPQ9BWF2 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
TRAIPQ9BWF2 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
TRAIPQ9BWF2 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRAIPQ9BWF2 ENSA-206ENST00000361631 725 ntTSL 2 BASIC18.92■□□□□ 0.62
TRAIPQ9BWF2 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRAIPQ9BWF2 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
TRAIPQ9BWF2 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC18.92■□□□□ 0.62
TRAIPQ9BWF2 AC112482.1-201ENST00000492080 688 ntBASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms