Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
CCDC28BQ9BUN5 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
CCDC28BQ9BUN5 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC28BQ9BUN5 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC28BQ9BUN5 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC28BQ9BUN5 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC28BQ9BUN5 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC28BQ9BUN5 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 RASA4DP-201ENST00000460726 1199 ntBASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 AC068472.1-201ENST00000474589 881 ntBASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 KRT17P2-201ENST00000300992 1314 ntBASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28BQ9BUN5 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 CRAT-202ENST00000393384 973 ntTSL 2 BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 AC008550.1-201ENST00000511500 884 ntBASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 AC092068.3-201ENST00000587894 2016 ntBASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28BQ9BUN5 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
CCDC28BQ9BUN5 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.83■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms