Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NKX3-1Q99801 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NKX3-1Q99801 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NKX3-1Q99801 BX664615.1-201ENST00000443558 458 ntBASIC15.14■□□□□ 0.01
NKX3-1Q99801 AC104076.2-201ENST00000448912 469 ntBASIC15.14■□□□□ 0.01
NKX3-1Q99801 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NKX3-1Q99801 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC15.14■□□□□ 0.01
NKX3-1Q99801 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NKX3-1Q99801 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC15.14■□□□□ 0.01
NKX3-1Q99801 AC087388.1-201ENST00000571370 1112 ntBASIC15.14■□□□□ 0.01
NKX3-1Q99801 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC15.14■□□□□ 0.01
NKX3-1Q99801 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NKX3-1Q99801 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NKX3-1Q99801 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NKX3-1Q99801 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NKX3-1Q99801 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NKX3-1Q99801 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NKX3-1Q99801 AC073508.3-201ENST00000619697 1419 ntBASIC15.14■□□□□ 0.01
NKX3-1Q99801 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NKX3-1Q99801 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NKX3-1Q99801 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
NKX3-1Q99801 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
NKX3-1Q99801 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NKX3-1Q99801 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
NKX3-1Q99801 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NKX3-1Q99801 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC15.14■□□□□ 0.01
NKX3-1Q99801 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC15.14■□□□□ 0.01
NKX3-1Q99801 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC15.14■□□□□ 0.01
NKX3-1Q99801 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NKX3-1Q99801 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NKX3-1Q99801 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NKX3-1Q99801 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC15.14■□□□□ 0.01
NKX3-1Q99801 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NKX3-1Q99801 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NKX3-1Q99801 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NKX3-1Q99801 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NKX3-1Q99801 AC116353.5-201ENST00000638148 1699 ntBASIC15.13■□□□□ 0.01
NKX3-1Q99801 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC15.13■□□□□ 0.01
NKX3-1Q99801 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC15.13■□□□□ 0.01
NKX3-1Q99801 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC15.13■□□□□ 0.01
NKX3-1Q99801 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
NKX3-1Q99801 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
NKX3-1Q99801 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
NKX3-1Q99801 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NKX3-1Q99801 KRT18P48-201ENST00000434763 852 ntBASIC15.13■□□□□ 0.01
NKX3-1Q99801 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
NKX3-1Q99801 AC092647.4-201ENST00000457211 535 ntBASIC15.13■□□□□ 0.01
NKX3-1Q99801 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NKX3-1Q99801 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC15.13■□□□□ 0.01
NKX3-1Q99801 NT5C-211ENST00000582170 653 ntTSL 3 BASIC15.13■□□□□ 0.01
NKX3-1Q99801 RBM42-202ENST00000586618 771 ntTSL 3 BASIC15.13■□□□□ 0.01
NKX3-1Q99801 TMED1-207ENST00000591695 809 ntTSL 5 BASIC15.13■□□□□ 0.01
NKX3-1Q99801 NTF6B-201ENST00000591913 560 ntBASIC15.13■□□□□ 0.01
NKX3-1Q99801 AC140113.3-201ENST00000605663 199 ntBASIC15.13■□□□□ 0.01
NKX3-1Q99801 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC15.13■□□□□ 0.01
NKX3-1Q99801 AC139887.4-201ENST00000607877 719 ntBASIC15.13■□□□□ 0.01
NKX3-1Q99801 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NKX3-1Q99801 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NKX3-1Q99801 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NKX3-1Q99801 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
NKX3-1Q99801 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
NKX3-1Q99801 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
NKX3-1Q99801 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
NKX3-1Q99801 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NKX3-1Q99801 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NKX3-1Q99801 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
NKX3-1Q99801 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
NKX3-1Q99801 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
NKX3-1Q99801 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NKX3-1Q99801 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NKX3-1Q99801 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NKX3-1Q99801 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC15.13■□□□□ 0.01
NKX3-1Q99801 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
NKX3-1Q99801 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NKX3-1Q99801 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
NKX3-1Q99801 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NKX3-1Q99801 BX276092.7-203ENST00000637198 1536 ntBASIC15.12■□□□□ 0.01
NKX3-1Q99801 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
NKX3-1Q99801 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC15.12■□□□□ 0.01
NKX3-1Q99801 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC15.12■□□□□ 0.01
NKX3-1Q99801 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
NKX3-1Q99801 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
NKX3-1Q99801 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC15.12■□□□□ 0.01
NKX3-1Q99801 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NKX3-1Q99801 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
NKX3-1Q99801 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
NKX3-1Q99801 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
NKX3-1Q99801 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC15.12■□□□□ 0.01
NKX3-1Q99801 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NKX3-1Q99801 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NKX3-1Q99801 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
NKX3-1Q99801 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
NKX3-1Q99801 AC009154.2-201ENST00000621177 724 ntBASIC15.12■□□□□ 0.01
NKX3-1Q99801 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
NKX3-1Q99801 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC15.12■□□□□ 0.01
NKX3-1Q99801 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
NKX3-1Q99801 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
NKX3-1Q99801 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
NKX3-1Q99801 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NKX3-1Q99801 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms