Protein–RNA interactions for Protein: Q99569

PKP4, Plakophilin-4, humanhuman

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4Q99569 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
PKP4Q99569 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
PKP4Q99569 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.85■□□□□ 0.29
PKP4Q99569 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.85■□□□□ 0.29
PKP4Q99569 AC097637.2-201ENST00000624096 1997 ntBASIC16.85■□□□□ 0.29
PKP4Q99569 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PKP4Q99569 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC16.85■□□□□ 0.29
PKP4Q99569 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PKP4Q99569 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
PKP4Q99569 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PKP4Q99569 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PKP4Q99569 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
PKP4Q99569 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
PKP4Q99569 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PKP4Q99569 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PKP4Q99569 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
PKP4Q99569 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PKP4Q99569 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PKP4Q99569 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.84■□□□□ 0.29
PKP4Q99569 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PKP4Q99569 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
PKP4Q99569 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.84■□□□□ 0.29
PKP4Q99569 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.84■□□□□ 0.29
PKP4Q99569 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC16.84■□□□□ 0.29
PKP4Q99569 KRT126P-201ENST00000549467 1181 ntBASIC16.84■□□□□ 0.29
PKP4Q99569 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC16.84■□□□□ 0.29
PKP4Q99569 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.84■□□□□ 0.29
PKP4Q99569 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
PKP4Q99569 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16.84■□□□□ 0.29
PKP4Q99569 AL022326.1-202ENST00000641533 845 ntBASIC16.84■□□□□ 0.29
PKP4Q99569 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PKP4Q99569 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PKP4Q99569 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PKP4Q99569 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.84■□□□□ 0.29
PKP4Q99569 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
PKP4Q99569 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PKP4Q99569 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PKP4Q99569 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
PKP4Q99569 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PKP4Q99569 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.84■□□□□ 0.29
PKP4Q99569 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PKP4Q99569 AP001094.4-201ENST00000579008 2176 ntBASIC16.84■□□□□ 0.29
PKP4Q99569 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PKP4Q99569 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
PKP4Q99569 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
PKP4Q99569 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.83■□□□□ 0.29
PKP4Q99569 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
PKP4Q99569 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.29
PKP4Q99569 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
PKP4Q99569 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.83■□□□□ 0.29
PKP4Q99569 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
PKP4Q99569 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PKP4Q99569 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
PKP4Q99569 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PKP4Q99569 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
PKP4Q99569 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.83■□□□□ 0.28
PKP4Q99569 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PKP4Q99569 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PKP4Q99569 SCARNA2-201ENST00000458748 420 ntBASIC16.83■□□□□ 0.28
PKP4Q99569 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
PKP4Q99569 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC16.83■□□□□ 0.28
PKP4Q99569 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PKP4Q99569 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.83■□□□□ 0.28
PKP4Q99569 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.83■□□□□ 0.28
PKP4Q99569 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PKP4Q99569 RN7SL510P-201ENST00000581311 263 ntBASIC16.83■□□□□ 0.28
PKP4Q99569 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.83■□□□□ 0.28
PKP4Q99569 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
PKP4Q99569 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PKP4Q99569 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
PKP4Q99569 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
PKP4Q99569 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PKP4Q99569 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
PKP4Q99569 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.82■□□□□ 0.28
PKP4Q99569 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.82■□□□□ 0.28
PKP4Q99569 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PKP4Q99569 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.82■□□□□ 0.28
PKP4Q99569 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PKP4Q99569 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
PKP4Q99569 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PKP4Q99569 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PKP4Q99569 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PKP4Q99569 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PKP4Q99569 LINC00982-205ENST00000420957 435 ntBASIC16.82■□□□□ 0.28
PKP4Q99569 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.82■□□□□ 0.28
PKP4Q99569 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC16.82■□□□□ 0.28
PKP4Q99569 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
PKP4Q99569 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PKP4Q99569 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC16.82■□□□□ 0.28
PKP4Q99569 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC16.82■□□□□ 0.28
PKP4Q99569 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.82■□□□□ 0.28
PKP4Q99569 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
PKP4Q99569 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.82■□□□□ 0.28
PKP4Q99569 AC064862.7-201ENST00000604520 867 ntBASIC16.82■□□□□ 0.28
PKP4Q99569 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
PKP4Q99569 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PKP4Q99569 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
PKP4Q99569 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
PKP4Q99569 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PKP4Q99569 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms