Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VPS13AQ96RL7 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS13AQ96RL7 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
VPS13AQ96RL7 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC16.9■□□□□ 0.3
VPS13AQ96RL7 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
VPS13AQ96RL7 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
VPS13AQ96RL7 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VPS13AQ96RL7 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS13AQ96RL7 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC16.9■□□□□ 0.3
VPS13AQ96RL7 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS13AQ96RL7 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS13AQ96RL7 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC16.89■□□□□ 0.3
VPS13AQ96RL7 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC16.89■□□□□ 0.3
VPS13AQ96RL7 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
VPS13AQ96RL7 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.89■□□□□ 0.3
VPS13AQ96RL7 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.3
VPS13AQ96RL7 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC16.89■□□□□ 0.3
VPS13AQ96RL7 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS13AQ96RL7 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS13AQ96RL7 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
VPS13AQ96RL7 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.89■□□□□ 0.29
VPS13AQ96RL7 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS13AQ96RL7 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC16.89■□□□□ 0.29
VPS13AQ96RL7 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.89■□□□□ 0.29
VPS13AQ96RL7 AC004790.1-201ENST00000612686 536 ntBASIC16.89■□□□□ 0.29
VPS13AQ96RL7 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC16.89■□□□□ 0.29
VPS13AQ96RL7 AC004840.1-201ENST00000636359 365 ntBASIC16.89■□□□□ 0.29
VPS13AQ96RL7 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS13AQ96RL7 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS13AQ96RL7 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC16.89■□□□□ 0.29
VPS13AQ96RL7 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC16.89■□□□□ 0.29
VPS13AQ96RL7 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS13AQ96RL7 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC16.89■□□□□ 0.29
VPS13AQ96RL7 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS13AQ96RL7 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC16.89■□□□□ 0.29
VPS13AQ96RL7 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC16.89■□□□□ 0.29
VPS13AQ96RL7 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VPS13AQ96RL7 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS13AQ96RL7 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VPS13AQ96RL7 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
VPS13AQ96RL7 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS13AQ96RL7 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC16.89■□□□□ 0.29
VPS13AQ96RL7 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC16.88■□□□□ 0.29
VPS13AQ96RL7 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VPS13AQ96RL7 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS13AQ96RL7 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VPS13AQ96RL7 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC16.88■□□□□ 0.29
VPS13AQ96RL7 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC16.88■□□□□ 0.29
VPS13AQ96RL7 AL009183.1-201ENST00000603760 355 ntBASIC16.88■□□□□ 0.29
VPS13AQ96RL7 RNA5-8SN1-201ENST00000610460 153 ntBASIC16.88■□□□□ 0.29
VPS13AQ96RL7 RNA5-8SN5-202ENST00000612463 153 ntBASIC16.88■□□□□ 0.29
VPS13AQ96RL7 RNA5-8SN4-201ENST00000613359 153 ntBASIC16.88■□□□□ 0.29
VPS13AQ96RL7 RNA5-8SN5-201ENST00000619471 153 ntBASIC16.88■□□□□ 0.29
VPS13AQ96RL7 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS13AQ96RL7 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC16.88■□□□□ 0.29
VPS13AQ96RL7 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS13AQ96RL7 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC16.88■□□□□ 0.29
VPS13AQ96RL7 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
VPS13AQ96RL7 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
VPS13AQ96RL7 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC16.88■□□□□ 0.29
VPS13AQ96RL7 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS13AQ96RL7 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC16.88■□□□□ 0.29
VPS13AQ96RL7 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC16.88■□□□□ 0.29
VPS13AQ96RL7 MPI-209ENST00000564003 1195 ntTSL 2 BASIC16.88■□□□□ 0.29
VPS13AQ96RL7 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC16.88■□□□□ 0.29
VPS13AQ96RL7 AL645728.2-201ENST00000641974 660 ntBASIC16.88■□□□□ 0.29
VPS13AQ96RL7 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
VPS13AQ96RL7 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS13AQ96RL7 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
VPS13AQ96RL7 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC16.88■□□□□ 0.29
VPS13AQ96RL7 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC16.88■□□□□ 0.29
VPS13AQ96RL7 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC16.88■□□□□ 0.29
VPS13AQ96RL7 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS13AQ96RL7 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS13AQ96RL7 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS13AQ96RL7 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
VPS13AQ96RL7 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS13AQ96RL7 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
VPS13AQ96RL7 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
VPS13AQ96RL7 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS13AQ96RL7 NME6-203ENST00000415644 849 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS13AQ96RL7 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC16.87■□□□□ 0.29
VPS13AQ96RL7 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
VPS13AQ96RL7 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC16.87■□□□□ 0.29
VPS13AQ96RL7 AC003101.2-201ENST00000612557 442 ntBASIC16.87■□□□□ 0.29
VPS13AQ96RL7 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC16.87■□□□□ 0.29
VPS13AQ96RL7 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS13AQ96RL7 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS13AQ96RL7 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
VPS13AQ96RL7 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS13AQ96RL7 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
VPS13AQ96RL7 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS13AQ96RL7 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VPS13AQ96RL7 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS13AQ96RL7 AC092933.1-201ENST00000393644 945 ntBASIC16.87■□□□□ 0.29
VPS13AQ96RL7 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VPS13AQ96RL7 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
VPS13AQ96RL7 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS13AQ96RL7 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS13AQ96RL7 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms