Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS35Q96QK1 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
VPS35Q96QK1 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS35Q96QK1 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VPS35Q96QK1 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VPS35Q96QK1 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
VPS35Q96QK1 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC17.18■□□□□ 0.34
VPS35Q96QK1 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS35Q96QK1 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
VPS35Q96QK1 HNRNPDP1-201ENST00000439535 754 ntBASIC17.18■□□□□ 0.34
VPS35Q96QK1 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC17.18■□□□□ 0.34
VPS35Q96QK1 RNA5SP419-201ENST00000515908 135 ntBASIC17.18■□□□□ 0.34
VPS35Q96QK1 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC17.18■□□□□ 0.34
VPS35Q96QK1 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC17.18■□□□□ 0.34
VPS35Q96QK1 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS35Q96QK1 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VPS35Q96QK1 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.18■□□□□ 0.34
VPS35Q96QK1 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS35Q96QK1 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS35Q96QK1 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS35Q96QK1 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.18■□□□□ 0.34
VPS35Q96QK1 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS35Q96QK1 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS35Q96QK1 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.18■□□□□ 0.34
VPS35Q96QK1 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS35Q96QK1 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
VPS35Q96QK1 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.17■□□□□ 0.34
VPS35Q96QK1 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VPS35Q96QK1 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS35Q96QK1 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS35Q96QK1 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS35Q96QK1 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
VPS35Q96QK1 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC17.17■□□□□ 0.34
VPS35Q96QK1 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS35Q96QK1 AL031284.1-201ENST00000419297 478 ntBASIC17.17■□□□□ 0.34
VPS35Q96QK1 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.17■□□□□ 0.34
VPS35Q96QK1 LINC00982-205ENST00000420957 435 ntBASIC17.17■□□□□ 0.34
VPS35Q96QK1 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.17■□□□□ 0.34
VPS35Q96QK1 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.17■□□□□ 0.34
VPS35Q96QK1 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VPS35Q96QK1 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VPS35Q96QK1 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.17■□□□□ 0.34
VPS35Q96QK1 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17.17■□□□□ 0.34
VPS35Q96QK1 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC17.17■□□□□ 0.34
VPS35Q96QK1 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.17■□□□□ 0.34
VPS35Q96QK1 AC006557.2-201ENST00000592985 1240 ntBASIC17.17■□□□□ 0.34
VPS35Q96QK1 KLK8-205ENST00000593490 267 ntTSL 3 BASIC17.17■□□□□ 0.34
VPS35Q96QK1 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC17.17■□□□□ 0.34
VPS35Q96QK1 AC004706.3-202ENST00000621574 984 ntBASIC17.17■□□□□ 0.34
VPS35Q96QK1 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS35Q96QK1 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS35Q96QK1 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS35Q96QK1 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.17■□□□□ 0.34
VPS35Q96QK1 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS35Q96QK1 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
VPS35Q96QK1 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.17■□□□□ 0.34
VPS35Q96QK1 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
VPS35Q96QK1 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS35Q96QK1 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS35Q96QK1 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
VPS35Q96QK1 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VPS35Q96QK1 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
VPS35Q96QK1 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VPS35Q96QK1 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS35Q96QK1 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VPS35Q96QK1 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS35Q96QK1 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VPS35Q96QK1 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VPS35Q96QK1 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.16■□□□□ 0.34
VPS35Q96QK1 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS35Q96QK1 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC17.16■□□□□ 0.34
VPS35Q96QK1 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS35Q96QK1 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.16■□□□□ 0.34
VPS35Q96QK1 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VPS35Q96QK1 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC17.16■□□□□ 0.34
VPS35Q96QK1 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
VPS35Q96QK1 AP001005.1-201ENST00000571755 1248 ntBASIC17.16■□□□□ 0.34
VPS35Q96QK1 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.16■□□□□ 0.34
VPS35Q96QK1 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC17.16■□□□□ 0.34
VPS35Q96QK1 AL353135.1-201ENST00000606729 504 ntBASIC17.16■□□□□ 0.34
VPS35Q96QK1 AL139424.1-201ENST00000607572 797 ntBASIC17.16■□□□□ 0.34
VPS35Q96QK1 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC17.16■□□□□ 0.34
VPS35Q96QK1 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.16■□□□□ 0.34
VPS35Q96QK1 AC008735.5-201ENST00000623544 497 ntBASIC17.16■□□□□ 0.34
VPS35Q96QK1 FAM215A-202ENST00000632077 792 ntBASIC17.16■□□□□ 0.34
VPS35Q96QK1 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS35Q96QK1 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.16■□□□□ 0.34
VPS35Q96QK1 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS35Q96QK1 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS35Q96QK1 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
VPS35Q96QK1 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.16■□□□□ 0.34
VPS35Q96QK1 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS35Q96QK1 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.16■□□□□ 0.34
VPS35Q96QK1 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS35Q96QK1 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS35Q96QK1 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
VPS35Q96QK1 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS35Q96QK1 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
VPS35Q96QK1 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.16■□□□□ 0.34
VPS35Q96QK1 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms