Protein–RNA interactions for Protein: Q96LD4

TRIM47, Tripartite motif-containing protein 47, humanhuman

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47Q96LD4 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM47Q96LD4 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC20.21■□□□□ 0.83
TRIM47Q96LD4 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
TRIM47Q96LD4 ADM-208ENST00000534464 1640 ntTSL 2 BASIC20.21■□□□□ 0.83
TRIM47Q96LD4 AC148477.5-201ENST00000625164 1645 ntBASIC20.21■□□□□ 0.83
TRIM47Q96LD4 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM47Q96LD4 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM47Q96LD4 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM47Q96LD4 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM47Q96LD4 AC103564.2-201ENST00000432853 1299 ntBASIC20.21■□□□□ 0.83
TRIM47Q96LD4 NKTR-203ENST00000442970 646 ntTSL 2 BASIC20.21■□□□□ 0.83
TRIM47Q96LD4 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC20.21■□□□□ 0.83
TRIM47Q96LD4 HLA-J-203ENST00000494367 1087 ntBASIC20.21■□□□□ 0.83
TRIM47Q96LD4 AP000344.2-201ENST00000512987 629 ntBASIC20.21■□□□□ 0.83
TRIM47Q96LD4 AC010507.1-201ENST00000633895 436 ntBASIC20.21■□□□□ 0.83
TRIM47Q96LD4 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC20.21■□□□□ 0.83
TRIM47Q96LD4 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM47Q96LD4 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM47Q96LD4 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM47Q96LD4 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC20.21■□□□□ 0.83
TRIM47Q96LD4 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM47Q96LD4 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM47Q96LD4 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC20.21■□□□□ 0.83
TRIM47Q96LD4 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC20.21■□□□□ 0.83
TRIM47Q96LD4 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC20.21■□□□□ 0.83
TRIM47Q96LD4 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM47Q96LD4 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC20.21■□□□□ 0.83
TRIM47Q96LD4 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC20.21■□□□□ 0.83
TRIM47Q96LD4 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
TRIM47Q96LD4 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
TRIM47Q96LD4 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
TRIM47Q96LD4 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM47Q96LD4 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC20.2■□□□□ 0.82
TRIM47Q96LD4 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM47Q96LD4 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM47Q96LD4 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM47Q96LD4 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
TRIM47Q96LD4 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
TRIM47Q96LD4 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM47Q96LD4 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC20.2■□□□□ 0.82
TRIM47Q96LD4 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
TRIM47Q96LD4 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM47Q96LD4 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC20.2■□□□□ 0.82
TRIM47Q96LD4 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
TRIM47Q96LD4 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC20.2■□□□□ 0.82
TRIM47Q96LD4 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC20.2■□□□□ 0.82
TRIM47Q96LD4 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM47Q96LD4 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC20.2■□□□□ 0.82
TRIM47Q96LD4 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC20.2■□□□□ 0.82
TRIM47Q96LD4 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM47Q96LD4 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC20.2■□□□□ 0.82
TRIM47Q96LD4 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
TRIM47Q96LD4 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
TRIM47Q96LD4 KRT19P2-202ENST00000557173 1012 ntBASIC20.2■□□□□ 0.82
TRIM47Q96LD4 RPL28-205ENST00000558131 444 ntTSL 5 BASIC20.2■□□□□ 0.82
TRIM47Q96LD4 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
TRIM47Q96LD4 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC20.2■□□□□ 0.82
TRIM47Q96LD4 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM47Q96LD4 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
TRIM47Q96LD4 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM47Q96LD4 AC134043.2-201ENST00000624206 2238 ntBASIC20.2■□□□□ 0.82
TRIM47Q96LD4 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
TRIM47Q96LD4 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM47Q96LD4 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM47Q96LD4 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM47Q96LD4 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM47Q96LD4 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM47Q96LD4 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 NCF1C-201ENST00000438382 1427 ntBASIC20.19■□□□□ 0.82
TRIM47Q96LD4 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 STK4-201ENST00000372801 2038 ntTSL 2 BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 STOM-202ENST00000347359 870 ntTSL 2 BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 CD99-202ENST00000381180 530 ntTSL 2 BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 AC092474.2-201ENST00000424288 719 ntBASIC20.19■□□□□ 0.82
TRIM47Q96LD4 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 CIPC-205ENST00000555437 566 ntTSL 3 BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM47Q96LD4 BCAR1-209ENST00000546196 1340 ntBASIC20.19■□□□□ 0.82
TRIM47Q96LD4 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms