Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC4Q92889 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC4Q92889 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC4Q92889 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC4Q92889 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
ERCC4Q92889 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC4Q92889 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC4Q92889 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC4Q92889 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC4Q92889 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC4Q92889 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC19.65■□□□□ 0.74
ERCC4Q92889 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC19.65■□□□□ 0.74
ERCC4Q92889 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC19.65■□□□□ 0.74
ERCC4Q92889 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC19.65■□□□□ 0.74
ERCC4Q92889 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC4Q92889 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
ERCC4Q92889 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC4Q92889 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC4Q92889 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC4Q92889 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC4Q92889 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC4Q92889 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC4Q92889 AC093525.9-201ENST00000624961 1746 ntBASIC19.65■□□□□ 0.74
ERCC4Q92889 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC19.64■□□□□ 0.74
ERCC4Q92889 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
ERCC4Q92889 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
ERCC4Q92889 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
ERCC4Q92889 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.74
ERCC4Q92889 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
ERCC4Q92889 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC19.64■□□□□ 0.74
ERCC4Q92889 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC19.64■□□□□ 0.74
ERCC4Q92889 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
ERCC4Q92889 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
ERCC4Q92889 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ERCC4Q92889 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
ERCC4Q92889 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ERCC4Q92889 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
ERCC4Q92889 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ERCC4Q92889 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
ERCC4Q92889 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ERCC4Q92889 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC19.64■□□□□ 0.73
ERCC4Q92889 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ERCC4Q92889 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
ERCC4Q92889 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC19.64■□□□□ 0.73
ERCC4Q92889 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC19.64■□□□□ 0.73
ERCC4Q92889 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
ERCC4Q92889 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC19.64■□□□□ 0.73
ERCC4Q92889 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ERCC4Q92889 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
ERCC4Q92889 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC19.64■□□□□ 0.73
ERCC4Q92889 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
ERCC4Q92889 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ERCC4Q92889 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC19.64■□□□□ 0.73
ERCC4Q92889 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ERCC4Q92889 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
ERCC4Q92889 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
ERCC4Q92889 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
ERCC4Q92889 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ERCC4Q92889 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
ERCC4Q92889 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ERCC4Q92889 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
ERCC4Q92889 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ERCC4Q92889 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC19.63■□□□□ 0.73
ERCC4Q92889 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ERCC4Q92889 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ERCC4Q92889 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
ERCC4Q92889 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC19.63■□□□□ 0.73
ERCC4Q92889 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ERCC4Q92889 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC19.63■□□□□ 0.73
ERCC4Q92889 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC19.63■□□□□ 0.73
ERCC4Q92889 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC19.63■□□□□ 0.73
ERCC4Q92889 LINC02012-201ENST00000608206 1725 ntBASIC19.63■□□□□ 0.73
ERCC4Q92889 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC19.63■□□□□ 0.73
ERCC4Q92889 TBC1D3P5-201ENST00000579401 1545 ntBASIC19.63■□□□□ 0.73
ERCC4Q92889 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC19.63■□□□□ 0.73
ERCC4Q92889 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
ERCC4Q92889 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
ERCC4Q92889 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ERCC4Q92889 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
ERCC4Q92889 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC19.63■□□□□ 0.73
ERCC4Q92889 AC007967.3-201ENST00000434308 558 ntBASIC19.63■□□□□ 0.73
ERCC4Q92889 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC19.63■□□□□ 0.73
ERCC4Q92889 HOMER2P1-201ENST00000455653 964 ntBASIC19.63■□□□□ 0.73
ERCC4Q92889 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC19.63■□□□□ 0.73
ERCC4Q92889 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC19.63■□□□□ 0.73
ERCC4Q92889 AC019129.2-201ENST00000609837 1235 ntBASIC19.63■□□□□ 0.73
ERCC4Q92889 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
ERCC4Q92889 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC19.63■□□□□ 0.73
ERCC4Q92889 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
ERCC4Q92889 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC19.63■□□□□ 0.73
ERCC4Q92889 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
ERCC4Q92889 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ERCC4Q92889 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC19.63■□□□□ 0.73
ERCC4Q92889 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
ERCC4Q92889 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ERCC4Q92889 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
ERCC4Q92889 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ERCC4Q92889 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ERCC4Q92889 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ERCC4Q92889 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms