Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
NUDCD3Q8IVD9 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NUDCD3Q8IVD9 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC17.23■□□□□ 0.35
NUDCD3Q8IVD9 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC17.23■□□□□ 0.35
NUDCD3Q8IVD9 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
NUDCD3Q8IVD9 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.23■□□□□ 0.35
NUDCD3Q8IVD9 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NUDCD3Q8IVD9 AC092068.3-201ENST00000587894 2016 ntBASIC17.23■□□□□ 0.35
NUDCD3Q8IVD9 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
NUDCD3Q8IVD9 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 LINC02199-201ENST00000506655 2702 ntBASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 AC096633.1-201ENST00000422446 749 ntBASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 MTCL1P1-201ENST00000446207 792 ntBASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 PPOX-214ENST00000535223 664 ntTSL 3 BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
NUDCD3Q8IVD9 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 AC006449.5-201ENST00000610658 2098 ntBASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 CRAT-202ENST00000393384 973 ntTSL 2 BASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 RASA4DP-201ENST00000460726 1199 ntBASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
NUDCD3Q8IVD9 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC17.21■□□□□ 0.34
NUDCD3Q8IVD9 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC17.21■□□□□ 0.34
NUDCD3Q8IVD9 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
NUDCD3Q8IVD9 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
NUDCD3Q8IVD9 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
NUDCD3Q8IVD9 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
NUDCD3Q8IVD9 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NUDCD3Q8IVD9 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
NUDCD3Q8IVD9 AL162727.3-201ENST00000635661 2787 ntBASIC17.2■□□□□ 0.34
NUDCD3Q8IVD9 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC17.2■□□□□ 0.34
NUDCD3Q8IVD9 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NUDCD3Q8IVD9 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.2■□□□□ 0.34
NUDCD3Q8IVD9 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.2■□□□□ 0.34
NUDCD3Q8IVD9 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
NUDCD3Q8IVD9 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
NUDCD3Q8IVD9 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms