Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
UBE3BQ7Z3V4 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC21.47■■□□□ 1.03
UBE3BQ7Z3V4 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
UBE3BQ7Z3V4 SLC25A1P3-201ENST00000395415 828 ntBASIC21.47■■□□□ 1.03
UBE3BQ7Z3V4 RPS8P6-201ENST00000426177 609 ntBASIC21.47■■□□□ 1.03
UBE3BQ7Z3V4 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC21.47■■□□□ 1.03
UBE3BQ7Z3V4 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC21.47■■□□□ 1.03
UBE3BQ7Z3V4 FAM185BP-201ENST00000443595 716 ntBASIC21.47■■□□□ 1.03
UBE3BQ7Z3V4 AC004967.1-201ENST00000453589 447 ntBASIC21.47■■□□□ 1.03
UBE3BQ7Z3V4 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC21.47■■□□□ 1.03
UBE3BQ7Z3V4 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC21.47■■□□□ 1.03
UBE3BQ7Z3V4 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC21.47■■□□□ 1.03
UBE3BQ7Z3V4 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC21.47■■□□□ 1.03
UBE3BQ7Z3V4 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC21.47■■□□□ 1.03
UBE3BQ7Z3V4 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC21.47■■□□□ 1.03
UBE3BQ7Z3V4 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
UBE3BQ7Z3V4 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
UBE3BQ7Z3V4 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
UBE3BQ7Z3V4 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
UBE3BQ7Z3V4 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC21.47■■□□□ 1.03
UBE3BQ7Z3V4 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC21.47■■□□□ 1.03
UBE3BQ7Z3V4 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
UBE3BQ7Z3V4 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
UBE3BQ7Z3V4 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC21.46■■□□□ 1.03
UBE3BQ7Z3V4 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
UBE3BQ7Z3V4 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
UBE3BQ7Z3V4 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
UBE3BQ7Z3V4 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC21.46■■□□□ 1.03
UBE3BQ7Z3V4 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC21.46■■□□□ 1.03
UBE3BQ7Z3V4 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
UBE3BQ7Z3V4 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
UBE3BQ7Z3V4 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
UBE3BQ7Z3V4 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
UBE3BQ7Z3V4 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
UBE3BQ7Z3V4 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
UBE3BQ7Z3V4 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC21.46■■□□□ 1.03
UBE3BQ7Z3V4 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC21.46■■□□□ 1.03
UBE3BQ7Z3V4 AC005829.1-201ENST00000570002 483 ntBASIC21.46■■□□□ 1.03
UBE3BQ7Z3V4 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC21.46■■□□□ 1.03
UBE3BQ7Z3V4 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC21.46■■□□□ 1.03
UBE3BQ7Z3V4 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC21.46■■□□□ 1.03
UBE3BQ7Z3V4 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
UBE3BQ7Z3V4 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC21.46■■□□□ 1.03
UBE3BQ7Z3V4 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
UBE3BQ7Z3V4 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
UBE3BQ7Z3V4 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC21.46■■□□□ 1.03
UBE3BQ7Z3V4 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC21.46■■□□□ 1.03
UBE3BQ7Z3V4 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
UBE3BQ7Z3V4 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
UBE3BQ7Z3V4 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC21.46■■□□□ 1.03
UBE3BQ7Z3V4 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
UBE3BQ7Z3V4 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
UBE3BQ7Z3V4 BOC-212ENST00000485230 2173 ntTSL 2 BASIC21.46■■□□□ 1.03
UBE3BQ7Z3V4 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
UBE3BQ7Z3V4 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
UBE3BQ7Z3V4 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
UBE3BQ7Z3V4 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
UBE3BQ7Z3V4 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
UBE3BQ7Z3V4 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC21.45■■□□□ 1.02
UBE3BQ7Z3V4 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
UBE3BQ7Z3V4 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
UBE3BQ7Z3V4 AC092183.1-201ENST00000469884 875 ntBASIC21.45■■□□□ 1.02
UBE3BQ7Z3V4 SMN2-210ENST00000511812 867 ntTSL 2 BASIC21.45■■□□□ 1.02
UBE3BQ7Z3V4 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC21.45■■□□□ 1.02
UBE3BQ7Z3V4 AC023141.13-201ENST00000604991 943 ntBASIC21.45■■□□□ 1.02
UBE3BQ7Z3V4 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC21.45■■□□□ 1.02
UBE3BQ7Z3V4 C20orf181-201ENST00000623918 480 ntBASIC21.45■■□□□ 1.02
UBE3BQ7Z3V4 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
UBE3BQ7Z3V4 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC21.45■■□□□ 1.02
UBE3BQ7Z3V4 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
UBE3BQ7Z3V4 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
UBE3BQ7Z3V4 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
UBE3BQ7Z3V4 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
UBE3BQ7Z3V4 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC21.45■■□□□ 1.02
UBE3BQ7Z3V4 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
UBE3BQ7Z3V4 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC21.45■■□□□ 1.02
UBE3BQ7Z3V4 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
UBE3BQ7Z3V4 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
UBE3BQ7Z3V4 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
UBE3BQ7Z3V4 AL138688.1-201ENST00000624851 1594 ntBASIC21.44■■□□□ 1.02
UBE3BQ7Z3V4 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
UBE3BQ7Z3V4 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC21.44■■□□□ 1.02
UBE3BQ7Z3V4 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC21.44■■□□□ 1.02
UBE3BQ7Z3V4 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC21.44■■□□□ 1.02
UBE3BQ7Z3V4 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
UBE3BQ7Z3V4 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
UBE3BQ7Z3V4 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
UBE3BQ7Z3V4 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
UBE3BQ7Z3V4 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC21.44■■□□□ 1.02
UBE3BQ7Z3V4 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
UBE3BQ7Z3V4 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC21.44■■□□□ 1.02
UBE3BQ7Z3V4 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC21.44■■□□□ 1.02
UBE3BQ7Z3V4 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC21.44■■□□□ 1.02
UBE3BQ7Z3V4 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC21.44■■□□□ 1.02
UBE3BQ7Z3V4 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC21.44■■□□□ 1.02
UBE3BQ7Z3V4 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC21.44■■□□□ 1.02
UBE3BQ7Z3V4 AC107918.2-201ENST00000530817 355 ntBASIC21.44■■□□□ 1.02
UBE3BQ7Z3V4 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC21.44■■□□□ 1.02
UBE3BQ7Z3V4 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
UBE3BQ7Z3V4 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC21.44■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms